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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataccatctcaattttcattccgttttttgtacctctgaacagtatttgcagcaatttgtgggcgaattattttctaaatgcaattgtatatatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG

Basic information

species Glycine max
transcript GLYMA07G37640.4
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208165713|gb|GD963701.1|GD963701
EST:     GAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGTAA
genomic: GAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
EST: gi|193552438|gb|FK509461.1|FK509461
EST:     GAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
genomic: GAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
EST: gi|193616169|gb|FK570153.1|FK570153
EST:     GAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
genomic: GAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
EST: gi|193326774|gb|FK288651.1|FK288651
EST:     AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
genomic: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
EST: gi|193730853|gb|FK666933.1|FK666933
EST:     AGTTCTTGGAAAAAAGAAATTGTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTTATAGCAGAA
genomic: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCT-ATAGCAGAA
EST: gi|193550632|gb|FK508467.1|FK508467
EST:     TTCTTGG-AAAAAGAATTTTGTTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
genomic: TTCTTGGAAAAAAGAA-TTTG-TTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
EST: gi|193700539|gb|FK635084.1|FK635084
EST:     AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
genomic: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
EST: gi|193689585|gb|FK628828.1|FK628828
EST:     AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
genomic: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcagcaatttgtgggcgaattattttctaaatgcaattgtatatatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG
                           ttctaaa  putative branch site (score: 2)
                    aattattttctaaatg  TA-rich tract