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...gcatcaaaagctagttgcttaggcagaccagcaacttgcaagcccttttggtttgtcgattatatttattatctaaaaactctactgtgaaattttccagATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATTTCAAAAGTGAACACACTGTCTGATGTTGAAGGGTTATGTGTATCATTTGCTGGTA
species | Glycine max |
transcript | GLYMA07G36610.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGCCACAAATTATAATAATAGGGTTGTCGAATGCCGTTTGGCTTCT ATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATTTCAAAAEST: gi|193670593|gb|FK612715.1|FK612715
genomic: CTGCTGCCACAAATTATAATAATAGGGTTGTCGAATGCCGTTTGGCTTCTgtgagtacat ... aattttccagATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATTTCAAAA
EST: CTGCTGCCACAAATTATAATAATAGGGTTGTCGAATGCCGTTTGGCTTCT ATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATTTCAAAAEST: gi|7146072|gb|AW507994.1|AW507994
genomic: CTGCTGCCACAAATTATAATAATAGGGTTGTCGAATGCCGTTTGGCTTCTgtgagtacat ... aattttccagATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATTTCAAAA
EST: CTGCTGCCACAAATTATAATAATAGGGTTGTCGAATGCCGTATGGCTTCT ATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAATGACGCAATTTCAATAEST: gi|193482924|gb|FK444047.1|FK444047
genomic: CTGCTGCCACAAATTATAATAATAGGGTTGTCGAATGCCGTTTGGCTTCTgtgagtacat ... aattttccagATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATTTCAAAA
EST: CTGCTGCCACAAATTATAATAATAGGGTTGTCGAATGCCGTTTGGCTTCT ATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATTTCAAAA
genomic: CTGCTGCCACAAATTATAATAATAGGGTTGTCGAATGCCGTTTGGCTTCTgtgagtacat ... aattttccagATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATTTCAAAA
ttttggtttgtcgattatatttattatctaaaaactctactgtgaaattttccagATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATTTCAAAAGTGAACACACTGTCTGATGTTGAAGGGTTATGTGTATCATTTGCTGGTA
atctaaa putative branch site (score: 3)
ttttcc putative PPT
tttgtcgattatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatcaaaagctagttgcttaggcagaccagcaacttgcaagcccttttggtttgtcgattatatttattatctaaaaactctactgtgaaattttccagATTGTGCTCGCTATAAAGCTAGGGATGGATCCAAAAGAGGCAATTTCAAAAGTGAACACACTGTCTGATGTTGAAGGGTTATGTGTATCATTTGCTGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - -gttgctt
- - - - - - - - - - - - - accagca
- - - - - - - - - - - - - - - - - cttgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctactg