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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaatttccttgaactataaaagctcgctttttcatatatttggactgtaataactgcaacatatttgttgagcagATGATGTGGCGGCTTAATTTCTTTGTGGTGTTCTGTTGTATTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTC

Basic information

species Glycine max
transcript GLYMA07G36550.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G36550.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G06550.2 (Arabidopsis thaliana), 3'ss of exon 7
--gtatgcaatttccttgaactataaaagctcgctttttcatatatttggactgtaataactgcaacatatttgttgagcagATGATGTGGCGGCTTAATTTCTTTGTGGTGTTCTGTTGTATTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTC
      || || ||||       |     ||   ||||   | |        || |||  ||   | ||  ||| |   ||||||||||||||||| |||||| | ||  | ||||  || || || || ||||||||||||||| |||||||||||||||| ||||||||||| || ||||
gtaagagctatgtcctcccggctttttt-cttatttttggctgtcacctacttgaaatt-ctaacatattcttggtctacagATGATGTGGCGGCTAAATTTCCTGGTCATATTCTCCTGCATCGTCCTCAACAACAGTTACATGCTATACTACATCTGCCCAATGCACACTCTGTTTACTC

upper sequence: GLYMA07G36550.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 7
------gtatgcaatttccttgaact--ataaaagctcgctttttcat-atatttggactgtaataactgcaacatatttgttgagcagATGATGTGGCGGCTTAATTTCTTTGTGGTGTTCTGTTGTATTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTC
      |     || |  ||| |  |  ||  | |        | ||| |||||  || | |||||   | ||  | |||||||| |||||||||||||||||||||||||| ||| |||| || ||| |||| ||||| ||||| || ||| |||||||||| |||||||||||||||||||||||||
gtaactgcccctaaatctcttaagtttgattcatggagttccatccatgatattctgattctaata---gtaagttttttgttgaacagATGATGTGGCGGCTTAATTTCTTGGTGTTGTTTTGCTGTGTTGTCCTTAATAACAGCTATATGCTATACTACATTTGCCCCATGCACACTCTTTTCACTC

upper sequence: GLYMA07G36550.1 (Glycine max), 3'ss of exon 7
lower sequence: EDP02440 (Chlamydomonas reinhardtii), 3'ss of exon 4
--------------------------------gtatgcaatttccttgaactataaaagctcgctttttcatatatttggac-tgtaataactgcaacatatttgttgagcagATGATGTGGCGGCTTAATTTCTTTGTGGTGTTCTGTTGTATTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTC
                                |  | | |   | |  |    |   | | |     |||     |   |||          | |  || ||| |    ||||||||||||||| || || ||| | ||| | |||   ||  | || || |||||||| |||||| | |||||||||||||||||||||||           
gcgtttgctggcacgcgctgaagccgctgctagacttccacaccttgcactcgtctcatccccacgcttcccgcttcccgacaccccgcggttccctcagATTCGC---GCAGATGATGTGGCGCCTCAACTTCATGGTGTTCTTCACGTGCGTGGTGCTCAACAACAGCTACATGCTCTACTACATCTGCCCCATGCACACC----------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctcgctttttcatatatttggactgtaataactgcaacatatttgttgagcagATGATGTGGCGGCTTAATTTCTTTGTGGTGTTCTGTTGTATTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTC
                           taataac  putative branch site (score: 1)
       tttttcatatattt  TA-rich tract