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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaattttttatttttatttttttgcatttatcttcttttctgaatttttgttagttgaaatggcattttctgccaaacacataagatttaagacttgcttaacattttagtttggtttttcacgcaatgtagAATGCAAAAGAAGCTGAGGAAGAACCTATTGTGAAATCTGAAACTGATATAAAGGTCGGAAACAAAGAGTCTTCTGCTGAAATCATCAATAAG

Basic information

species Glycine max
transcript GLYMA07G35090.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207730762|gb|GD707887.1|GD707887
EST:     CCAGTGATAGTCCTGGGAGTGAAGGATCTTTGCATAATAAAGTGGAAGAG                         AATGCAAAAGAAGCTGAGGAAGAACCTATTGTGAAATCTGAAACTAATATA
genomic: CCAGTGATAGTCCTGGGAGTGAAGGATCTTTGCATAATAAAGTGGAAGAGgtgaattttt ... cgcaatgtagAATGCAAAAGAAGCTGAGGAAGAACCTATTGTGAAATCTGAAACTGATATA
EST: gi|207774494|gb|GD744652.1|GD744652
EST:     TCCTGGGAGTGAAGGATCTTTGCATAATAAAGTGGAAGAG                         AATGCAAAAGAAGCTGAGGAAGAACCTATTGTGAAATCTGAAACTGATATA
genomic: TCCTGGGAGTGAAGGATCTTTGCATAATAAAGTGGAAGAGgtgaattttt ... cgcaatgtagAATGCAAAAGAAGCTGAGGAAGAACCTATTGTGAAATCTGAAACTGATATA
EST: gi|298164487|gb|HO014132.1|HO014132
EST:     TGCATAATAAAGTGGAAGAG                         AATGCAAAAGAAGCTGAGGAAGAACCTATTGTGAAATCTGAAACTGATATA
genomic: TGCATAATAAAGTGGAAGAGgtgaattttt ... cgcaatgtagAATGCAAAAGAAGCTGAGGAAGAACCTATTGTGAAATCTGAAACTGATATA
EST: gi|151393967|gb|EV263838.1|EV263838
EST:     CCAGTGATAGTCCTGGGAGTGAAGGATCTTTGCATAATAAAGTGGAAGAG                         AATGCAAAAGAAGCTGAGGAAAAACCTATTGTGAAATCTGAAACTGATATA
genomic: CCAGTGATAGTCCTGGGAGTGAAGGATCTTTGCATAATAAAGTGGAAGAGgtgaattttt ... cgcaatgtagAATGCAAAAGAAGCTGAGGAAGAACCTATTGTGAAATCTGAAACTGATATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacataagatttaagacttgcttaacattttagtttggtttttcacgcaatgtagAATGCAAAAGAAGCTGAGGAAGAACCTATTGTGAAATCTGAAACTGATATAAAGGTCGGAAACAAAGAGTCTTCTGCTGAAATCATCAATAAG
                   gcttaac  putative branch site (score: 3)
                                      tttttcac  putative PPT
                     ttaacattttagttt  TA-rich tract