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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggggggagaagagtgcaagtatttctattcaatatctactcatcttggatgtttattgggcagcttaattagattggtatgatatctatctgatatccagGTTAATTATAATGGTGTGGATTTGCCCCTGCCCTTCAACTTGGAGATCTTGAAATGGGCAAACAAAACATGGGAGATTCTGTCTTCTGCCAAACTTCCCT

Basic information

species Glycine max
transcript GLYMA07G34730.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532076|gb|EH260209.1|EH260209
EST:     CACCATGTGATAGCATCGAGGTTTTGAAGCAAGCTCTTTTAAATAACACA                         GTTAATTATAATGGTGTGGATTTGCCCCTGCCCTTCAACTTGGAGATCTTG
genomic: CACCATGTGATAGCATCGAGGTTTTGAAGCAAGCTCTTTTAAATAACACAgtgagttacc ... tgatatccagGTTAATTATAATGGTGTGGATTTGCCCCTGCCCTTCAACTTGGAGATCTTG
EST: gi|151395291|gb|EV265162.1|EV265162
EST:     CACCATGTGATAGCATCGAGGTTTTGAAGCAAGCTCTTTTAAATAACACA                         GTTAATTATAATGGTGTGGATTTGCCCCTGCCCTTCAACTTGGAGATCTTG
genomic: CACCATGTGATAGCATCGAGGTTTTGAAGCAAGCTCTTTTAAATAACACAgtgagttacc ... tgatatccagGTTAATTATAATGGTGTGGATTTGCCCCTGCCCTTCAACTTGGAGATCTTG
EST: gi|4289253|gb|AI441449.1|AI441449
EST:     CACCATGTGATAGCATCGAGGTTTTGAAGCAAGCTCTTTTAAATAACACA                         GTTAATTATAATGGTGTGGATTTGCCCCTGCCCTTCAACTTGGAGATCTTG
genomic: CACCATGTGATAGCATCGAGGTTTTGAAGCAAGCTCTTTTAAATAACACAgtgagttacc ... tgatatccagGTTAATTATAATGGTGTGGATTTGCCCCTGCCCTTCAACTTGGAGATCTTG
EST: gi|12688808|gb|BG155144.1|BG155144
EST:     CACCATGTGATAGCATCGAGGTTTTGAAGCAAGCTCTTTTAAATAACACA                         GTTAATTATAATGGTGTGGATTTGCCCCTGCCCTTCAACTTGGAGATCTTG
genomic: CACCATGTGATAGCATCGAGGTTTTGAAGCAAGCTCTTTTAAATAACACAgtgagttacc ... tgatatccagGTTAATTATAATGGTGTGGATTTGCCCCTGCCCTTCAACTTGGAGATCTTG
EST: gi|16996162|gb|BM085534.1|BM085534
EST:     CACCATGTGATAGCATCGAGGTTTTGAAGCAAGCTCTTTTAAATAACACA                         GTTAATTATAATGGTGTGGATTTGCCCCTGCCCTTCAACTTGGAGATCTTG
genomic: CACCATGTGATAGCATCGAGGTTTTGAAGCAAGCTCTTTTAAATAACACAgtgagttacc ... tgatatccagGTTAATTATAATGGTGTGGATTTGCCCCTGCCCTTCAACTTGGAGATCTTG
EST: gi|151409798|gb|EV279606.1|EV279606
EST:     CACCATGTGATAGCATCGAGGTTTTGAAGCAAGCTCTTTTAAATAACACA                         GTTAATTATAATGGTGTGGATTTGCCCCTGCCCTTCAACTTGGAGATCTTG
genomic: CACCATGTGATAGCATCGAGGTTTTGAAGCAAGCTCTTTTAAATAACACAgtgagttacc ... tgatatccagGTTAATTATAATGGTGTGGATTTGCCCCTGCCCTTCAACTTGGAGATCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatgtttattgggcagcttaattagattggtatgatatctatctgatatccagGTTAATTATAATGGTGTGGATTTGCCCCTGCCCTTCAACTTGGAGATCTTGAAATGGGCAAACAAAACATGGGAGATTCTGTCTTCTGCCAAACTTCCCT
                                          atctgat  putative branch site (score: 4)
                                       tctatct  CT-rich tract
                   ttaattagatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggggggagaagagtgcaagtatttctattcaatatctactcatcttggatgtttattgggcagcttaattagattggtatgatatctatctgatatccagGTTAATTATAATGGTGTGGATTTGCCCCTGCCCTTCAACTTGGAGATCTTGAAATGGGCAAACAAAACATGGGAGATTCTGTCTTCTGCCAAACTTCCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
gggggga
- - - - - - -tgcaagt
- - - - - - - - - - - - ctattca
- - - - - - - - - - - - - - - - - -ctactca
- - - - - - - - - - - - - - - - - - - - - - -tggatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtatga