Sequence
atgc intronic sequence ATGC exonic sequencegtaactaatgacactttttttcaaccaatgtggtacttttgattgaattagttttcctaaattgatgaatgttggttgcagAGGATTTTGAATGTTCAGTACTCAATTCCTGACTACGTTCACATATCTTCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTCGCTGATCCTGCAAGG
Basic information
species | Glycine max |
transcript | GLYMA07G33120.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G33120.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os12g39630.1 (Oryza sativa), 3'ss of exon 7
------------------------------gtaactaatgacactttttttcaaccaatgtggtacttttgattgaattagttttcctaaattgatga-------atgttgg-------ttgcagAGGATTTTGAATGTTCAGTACTCAATTCCTGACTACGTTCACATATCTTCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTCGCTGATCCTGCAAGG
|| | | ||| || | ||| ||| || | || | ||| | |||| || || || | || || ||||||| || ||| |||||||||||||||||| ||||| || ||||||||| | |||||||| |||| || | ||||||||||| | | || || ||
gtatccttgccaaccattcagctttgcagcaccacaatttacagttataatcagccagctaaatagtaatgcctaaat-actttttttagataaataatgtctaaatactgatctcaatttgcagAAAATATTGGGTGTTCAGTACTCAATTCCAGACTATGTCCACATATCTCCGGAGTGCCGCGATCTCATTACGAGGATTTTTGTTGGCAACCCAGCTAGT
upper sequence: GLYMA07G33120.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G171435_T01 (Zea mays), 3'ss of exon 7
--gtaactaatgacactttttttcaaccaatgtggtacttttgattgaatta---gttttc--------ctaaattgatg--aatgt----tggttgcagAGGATTTTGAATGTTCAGTACTCAATTCCTGACTACGTTCACATATCTTCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTCGCTGATCCTGCAAGG
||||| || || | | | || | | || ||| | | ||||| ||||| | ||| | ||| | ||||||| | || ||||| ||||||||| | ||||| |||||||| |||||||| | |||||| | ||||| || || ||||||||||| | ||||||||| | |
tctaaactagattggctacttctgagtctgcatgtttcacttaattcattctcctgtttttgctaacaactaaactaatggtagtgtcatctcgttgcagCGCATCTTGAACGTTCAGTACGCCATTCCAGACTACGTGAACATATCTCCAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATG
upper sequence: GLYMA07G33120.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G171435_T02 (Zea mays), 3'ss of exon 7
--gtaactaatgacactttttttcaaccaatgtggtacttttgattgaatta---gttttc--------ctaaattgatg--aatgttg----gttgcagAGGATTTTGAATGTTCAGTACTCAATTCCTGACTACGTTCACATATCTTCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTCGCTGATCCTGCAAGG-
||||| || || | | | || | | || ||| | | ||||| ||||| | ||| | ||| ||||||| | || ||||| ||||||||| | ||||| |||||||| |||||||| | |||||| | ||||| || || ||||||||||| | ||||||||| | |
tctaaactagattggctacttctgagtctgcatgtttcacttaattcattctcctgtttttgctaacaactaaactaatggtagtgtcatctcgttgcagCGCATCTTGAACGTTCAGTACGCCATTCCAGACTACGTGAACATATCTCCAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATGG
upper sequence: GLYMA07G33120.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G138861_T01 (Zea mays), 3'ss of exon 8
--------------gtaactaatgacactt--tttttcaaccaatgtggtacttttgattgaattagttttcctaaattgatg--aatgt----tggttgcagAGGATTTTGAATGTTCAGTACTCAATTCCTGACTACGTTCACATATCTTCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTCGCTGATCCTGCAAGG
|| | ||| || | ||| | |||| || | || || | || ||||| | ||| | ||| | ||| || | || ||||||||||||||| ||||||| ||| |||| |||||||| | |||||| | ||||| || || ||||||||||| | |||||||| | |
aaactctagatcggctactttctgagtctgcatgtttaacttaatgcatta-tcctgttttagctaacaa--ctaaactaatggtagtgtcatcttgttatagCGTATCTTGAATGTTCAGTACGCAATTCCAGACAACGTGAACATATCTCCAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGCGATCCTGCTACG
upper sequence: GLYMA07G33120.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0063g01080.t01 (Vitis vinifera), 3'ss of exon 7
gtaactaatgacactttttttcaaccaatgtggtacttttgattgaattagttttcctaaattgatgaatgttggttgcagAGGATTTTGAATGTTCAGTACTCAATTCCTGACTACGTTCACATATCTTCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTCGCTGATCCTGCAAGG
||| | | | | || | | || ||| | | |||||| | |||| |||| || |||| |||||||| |||||||| || ||||| || ||||| || || ||||| |||||| | ||||||||||||||||| |||||||||||||| ||||||||||||| |
gtatttgcgcaggcataattactgc--atatggcagctc-aattgaa--aatttt---aaatgattgtttgtttcttgcagAGAATTTTGAAAGTCCAGTATTCTATTCCAGATTATGTTCATATATCTCCTGAGTGCCGTCATCTGATCTCAAGGATTTTTGTAGCTGATCCTGCAACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatgtggtacttttgattgaattagttttcctaaattgatgaatgttggttgcagAGGATTTTGAATGTTCAGTACTCAATTCCTGACTACGTTCACATATCTTCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTCGCTGATCCTGCAAGG
ttttgattgaatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactaatgacactttttttcaaccaatgtggtacttttgattgaattagttttcctaaattgatgaatgttggttgcagAGGATTTTGAATGTTCAGTACTCAATTCCTGACTACGTTCACATATCTTCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTCGCTGATCCTGCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT