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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatctcctgtgctagatatacacttctaaatttgtgtgaatttctgatttacaaattacttttatgtcttcctactatactgactattgctctttcatattattattaaataactctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT

Basic information

species Glycine max
transcript GLYMA07G32190.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 7
gttatctcctgtgctagatata--cacttctaaatttgtgtgaatttc--tgatttacaaattactttta-tgtcttcctacta--tactgactattgctctttcata------ttattattaaataactc--tttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT
||||||| || | ||     |      || |   ||| | ||   ||   | |   ||| ||   |   | |  |||   |  |  || |  |   ||  | |  | |       |  || | ||| | |   ||| |||||||||| ||||||||||| ||||||||||| || ||||||||||||||||| |||||||| || ||||| ||  | |||
gttatcttctattctgctcttgactgttttttcttttttctggtcttgaataaaacacacataggtggcaatagcttgagaagagctattttcctctgtacctcaaaaattctccttctaatgaatgaatgggtttttgcagACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692862|gb|AW760961.1|AW760961
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|23728678|gb|BU762399.1|BU762399
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|7691785|gb|AW759906.1|AW759906
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|7691041|gb|AW759175.1|AW759175
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTTCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|120534368|gb|EH262501.1|EH262501
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTA
EST: gi|7796788|gb|AW782182.1|AW782182
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|14999814|gb|BI320628.1|BI320628
EST:     CAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: CAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|8669180|gb|BE190287.1|BE190287
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|15284741|gb|BI468632.1|BI468632
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|23063798|gb|BU578627.1|BU578627
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|16346698|gb|BI972293.1|BI972293
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|26269548|gb|CA820611.1|CA820611
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|15199917|gb|BI424075.1|BI424075
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|17519248|gb|BM188290.1|BM188290
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|6481941|gb|AW201212.1|AW201212
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|7796582|gb|AW781979.1|AW781979
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|14011803|gb|BG726725.1|BG726725
EST:     TACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|20498205|gb|BQ273135.1|BQ273135
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|20814778|gb|BQ299256.1|BQ299256
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|6481839|gb|AW201110.1|AW201110
EST:     AAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: AAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|26269373|gb|CA820436.1|CA820436
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|17153411|gb|BM143344.1|BM143344
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|7691923|gb|AW760040.1|AW760040
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|10237564|gb|BE806452.1|BE806452
EST:     TTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|8669191|gb|BE190298.1|BE190298
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctactatactgactattgctctttcatattattattaaataactctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATT
                                           ctctttgt  CT-rich tract
              tattgctctttcatat  TA-rich tract