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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtaaaactgccttcctgtacttatctaggatgagttgcacctgtttcattgtttttttaaaaacatttttcaaacgctacagATGTTCCTGAAGGATGTGTGATAGTACGAGAGCATGTTCCTATTAGCAACCTCTTTGCTTGTCTTTGGTTCAATGAAGTTGACCGATTTACTTCAAGGGA

Basic information

species Glycine max
transcript GLYMA07G31680.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G31680.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G28240.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaggtaaaactgccttcctgtacttatctaggatgagttgcacctgttt---cattgtttttttaaa-aacatttt--tcaaacgctacagATGTTCCTGAAGGATGTGTGATAGTACGAGAGCATGTTCCTATTAGCAACCTCTTTGCTTGTCTTTGGTTCAATGAAGTTGACCGATTTACTTCAAGGGA
    |||   ||   |  ||     | ||||  ||    |   |  | |    || |  |  | || | |||  | |  |    |  | |||| || || || || ||||| ||  || ||||||||||||| || |||||||||||  |||||||||||||||| |||||||||||||| ||||| || ||
----gtatgtctctttagcttattctgtctaaaatccccttttcgggatcaaacactaataatatagacaactatatggttgggctatgcagACGTACCCGAGGGTTGTGTCATTTTAAGAGAGCATGTTCCCATAAGCAACCTCTTCACTTGTCTTTGGTTCAACGAAGTTGACCGATTCACTTCTAGAGA

upper sequence: GLYMA07G31680.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0265g00120.t01 (Vitis vinifera), 3'ss of exon 7
gtaggtaaaactgccttcctgtacttatctaggatgagttgcacctgtttcattgtttttttaaaaacatt-tttcaaacg----ctacagATGTTCCTGAAGGATGTGTGATAGTACGAGAGCATGTTCCTATTAGCAACCTCTTTGCTTGTCTTTGGTTCAATGAAGTTGACCGATTTACTTCAAGGGA
||||||  ||   | ||| | |  || | |    |  |||  | ||||| |||  ||  || |      |  |||||  |      | ||||||| |||||||| || ||||| ||| | || ||  |||||||||||||||| ||| |||| ||||||||||| ||||||||||| |||||||| |||||
gtaggtccaagatcattcttctctttgtttttattcggttttatctgttccatctttcattcagttttctggtttcatgctgggtttgcagATGTGCCTGAAGGGTGCGTGATTGTAAGGGAACACATTCCTATTAGCAACCTATTTACTTGCCTTTGGTTCAACGAAGTTGACCGTTTTACTTCCAGGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatgagttgcacctgtttcattgtttttttaaaaacatttttcaaacgctacagATGTTCCTGAAGGATGTGTGATAGTACGAGAGCATGTTCCTATTAGCAACCTCTTTGCTTGTCTTTGGTTCAATGAAGTTGACCGATTTACTTCAAGGGA
                tttcattgttttttta  TA-rich tract