1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cagaacaatgcagtgagctgtatacattccacattaatctttttagactgtcttccctatgagaattttttgattgctgaccacacataaatgtctgcagGTTATCATGATGGGACAGCTTCTAGATTCTCCTTGCAACCACATCCTAATCTTAATTCTTCCATTCAGTTTGATGATAATGCATTTCCACTACAAAACCA
species | Glycine max |
transcript | GLYMA07G30990.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCCAGTACATCCTGGCCAGCCTTCAATGGATTCAGGAGTAACAGTTGGAG GTTATCATGATGGGACAGCTTCTAGATTCTCCTTGCAACCACATCCTAATCEST: gi|6964395|gb|AW433088.1|AW433088
genomic: TCCAGTACATCCTGGCCAGCCTTCAATGGATTCAGGAGTAACAGTTGGAGgtatatattt ... atgtctgcagGTTATCATGATGGGACAGCTTCTAGATTCTCCTTGCAACCACATCCTAATC
EST: TCCAGTACATCCTGGCCAGCCTTCAATGGATTCAGGAGTAACAGTTGGAG GTTATCATGATGGGACAGCTTCTAGATTCTCCTTGCAACCACATCCTAATCEST: gi|33387911|gb|CA851118.1|CA851118
genomic: TCCAGTACATCCTGGCCAGCCTTCAATGGATTCAGGAGTAACAGTTGGAGgtatatattt ... atgtctgcagGTTATCATGATGGGACAGCTTCTAGATTCTCCTTGCAACCACATCCTAATC
EST: TCCAGTACATCCTGGCCAGCCTTCAATGGATTCAGGAGTAACAGTTGGAG GTTATCATGATGGGACAGCTTCTAGATTCTCCTTGCAACCACATCCTAATC
genomic: TCCAGTACATCCTGGCCAGCCTTCAATGGATTCAGGAGTAACAGTTGGAGgtatatattt ... atgtctgcagGTTATCATGATGGGACAGCTTCTAGATTCTCCTTGCAACCACATCCTAATC
gactgtcttccctatgagaattttttgattgctgaccacacataaatgtctgcagGTTATCATGATGGGACAGCTTCTAGATTCTCCTTGCAACCACATCCTAATCTTAATTCTTCCATTCAGTTTGATGATAATGCATTTCCACTACAAAACCA
tgctgac putative branch site (score: 2)
tatgagaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagaacaatgcagtgagctgtatacattccacattaatctttttagactgtcttccctatgagaattttttgattgctgaccacacataaatgtctgcagGTTATCATGATGGGACAGCTTCTAGATTCTCCTTGCAACCACATCCTAATCTTAATTCTTCCATTCAGTTTGATGATAATGCATTTCCACTACAAAACCA
- - -caatgca
- - - - - - - -agctgta
- - - - - - - - - - - - cattcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacaca