1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgagaaaatattatagaatctgttggcaaaatttattcttcttatcacatgagtttgttgtaaaagtgaataaatggtgctactttttctttgcagAGACTATCTGAAATGTGCTGTTTTGTGGTGTCTCAACTGCTAGTGCTTGGCAAATCCATCATTTCTCGTGCCAACAACACTGAGGATGAAGCTGATGATG
species | Glycine max |
transcript | GLYMA07G29660.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATCAGAGAACTACTGCAAGATTGGAATCGCTTCATTCTGAGGGAGTTCAT AGACTATCTGAAATGTGCTGTTTTGTGGTGTCTCAACTGCTAGTGCTTGGCEST: gi|193628131|gb|FK576745.1|FK576745
genomic: ATCAGAGAACTACTGCAAGATTGGAATCGCTTCATTCTGAGGGAGTTCATgtacgagaaa ... ttctttgcagAGACTATCTGAAATGTGCTGTTTTGTGGTGTCTCAACTGCTAGTGCTTGGC
EST: ATCAGAGAACTACTGCAAGATTGGAATCGCTTCATTCTGAGGGAGTTCAT AGACTATCTGAAATGTGCTGTTTTGTGGTGTCTCAACTGCTAGTGCTTGGCEST: gi|193623365|gb|FK577361.1|FK577361
genomic: ATCAGAGAACTACTGCAAGATTGGAATCGCTTCATTCTGAGGGAGTTCATgtacgagaaa ... ttctttgcagAGACTATCTGAAATGTGCTGTTTTGTGGTGTCTCAACTGCTAGTGCTTGGC
EST: ATCAGAGAACTACTGCAAGATTGGAATCGCTTCATTCTGAGGGAGTTCAT AGACTATCTGAAATGTGCTGTTT-GTGGTGTCTCAACTGCTAGTGCTTGGCEST: gi|51335549|gb|CO979415.1|CO979415
genomic: ATCAGAGAACTACTGCAAGATTGGAATCGCTTCATTCTGAGGGAGTTCATgtacgagaaa ... ttctttgcagAGACTATCTGAAATGTGCTGTTTTGTGGTGTCTCAACTGCTAGTGCTTGGC
EST: ATCAGAGAACTACTGCAAGATTGGAATCGCTTCATTCTGAGGGAGTTCAT AGACTATCTGAAATGTGCTGTTTTGTGGTGTCTCAACTGCTAGTGCTTGGCEST: gi|193535568|gb|FK488710.1|FK488710
genomic: ATCAGAGAACTACTGCAAGATTGGAATCGCTTCATTCTGAGGGAGTTCATgtacgagaaa ... ttctttgcagAGACTATCTGAAATGTGCTGTTTTGTGGTGTCTCAACTGCTAGTGCTTGGC
EST: ATCAGAGAACTACTGCAAGATTGGAATCGCTTCATTCTGAGGGAGTTCAT AGACTATCTGAAATGTGCTGTTTTGTGGTGTCTCAACTGCTAGTGCTTGGCEST: gi|15203121|gb|BI425889.1|BI425889
genomic: ATCAGAGAACTACTGCAAGATTGGAATCGCTTCATTCTGAGGGAGTTCATgtacgagaaa ... ttctttgcagAGACTATCTGAAATGTGCTGTTTTGTGGTGTCTCAACTGCTAGTGCTTGGC
EST: ATCAGAGAACTACTGCAAGATTGGAATCGCTTCATTCTGAGGGAGTTCAT AGACTATCTGAAATGTGCTGTTTTGTGGTGTCTCAACTGCTAGTGCTTGGC
genomic: ATCAGAGAACTACTGCAAGATTGGAATCGCTTCATTCTGAGGGAGTTCATgtacgagaaa ... ttctttgcagAGACTATCTGAAATGTGCTGTTTTGTGGTGTCTCAACTGCTAGTGCTTGGC
ttatcacatgagtttgttgtaaaagtgaataaatggtgctactttttctttgcagAGACTATCTGAAATGTGCTGTTTTGTGGTGTCTCAACTGCTAGTGCTTGGCAAATCCATCATTTCTCGTGCCAACAACACTGAGGATGAAGCTGATGATG
tgctactttttcttt CT-rich tract
taaaagtgaataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgagaaaatattatagaatctgttggcaaaatttattcttcttatcacatgagtttgttgtaaaagtgaataaatggtgctactttttctttgcagAGACTATCTGAAATGTGCTGTTTTGTGGTGTCTCAACTGCTAGTGCTTGGCAAATCCATCATTTCTCGTGCCAACAACACTGAGGATGAAGCTGATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT