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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctactgcaccatttttaggtcaatgtagtaataatattgaattacttttcttaaactgttggattatgcttgcagAGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTTCTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACAG

Basic information

species Glycine max
transcript GLYMA07G29500.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G29500.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0063g01080.t01 (Vitis vinifera), 3'ss of exon 7
gtaacctactgcaccatttttaggtcaatgtagtaataatattgaattacttttcttaaactgttggattatgcttgcagAGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTTCTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACAG
|||   | |     |||  |||   || | | | |     ||||||       | |||||   |||  |  | ||||||||| ||||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||| ||||| ||||| ||||| || || ||||||  |
gta-tttgcgcaggcataattactgca-tatggcagctcaattgaaaa-----ttttaaatgattgtttgtttcttgcagAGAATTTTGAAAGTCCAGTATTCTATTCCAGATTATGTTCATATATCTCCTGAGTGCCGTCATCTGATCTCAAGGATTTTTGTAGCTGATCCTGCAACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254328433|gb|GR835398.1|GR835398
EST:     ATCC-TTTGAGGATCCAGAGGAACCT-AAAATTTCCGGAAGACAATTCAT                         AGGA-TTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTTCT
genomic: ATCCTTTTGAGGATCCAGAGGAACCTAAAAATTTCCGGAAGACAATTCATgtaacctact ... atgcttgcagAGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTTCT
EST: gi|24205189|gb|BU964442.1|BU964442
EST:     ATCCTTTTGAGGATCCAGAGGAACCTAAAAATTTCCGGAAGACAATTCAT                         AGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTTCT
genomic: ATCCTTTTGAGGATCCAGAGGAACCTAAAAATTTCCGGAAGACAATTCATgtaacctact ... atgcttgcagAGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTTCT
EST: gi|254328432|gb|GR835397.1|GR835397
EST:     ATCCTTTTGAGGATCCAGAGGAACCTAAAAATTTCCGGAAGACAATTCAT                         AGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTTCT
genomic: ATCCTTTTGAGGATCCAGAGGAACCTAAAAATTTCCGGAAGACAATTCATgtaacctact ... atgcttgcagAGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatgtagtaataatattgaattacttttcttaaactgttggattatgcttgcagAGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTTCTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACAG
     tagtaataatattgaa  TA-rich tract