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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttgattacttgcatgtttataatactgtgtctagttggtgtgctaattattattgtcatcactattcttaaaattttatttgttttataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG

Basic information

species Glycine max
transcript GLYMA07G18500.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18500.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0217g00020.t01 (Vitis vinifera), 3'ss of exon 6
gtaatttgattacttgcatgtttataatactgtgtctagttggtgtgctaattattattgtcatcactattcttaaaattttatttgttttataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG
       | ||| ||     || | |||| || ||    ||||||  ||  ||    ||| |    || |  | | | || |     ||   | || | |||||||||||||||||  | |||||||| ||| | |||||||| || || ||||| || || || ||||| |||||| | |||||||||||||
-------gtttattt---ctttcagaatattg-gttctcttggtgatct--tttgccttgcc----ctgtagtaacacttgtggggtttccttcatgatagGGCTTTGGAAGAGAAGCGGGCTCGACTGGGTCTAGTGGAATGTGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTG

upper sequence: GLYMA07G18500.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g06870.t01 (Vitis vinifera), 3'ss of exon 7
gtaatttgattacttgcatgtttataatactgtgtctagttggtgtgctaattattattgtcatcact-attcttaaaattttat--ttgttttataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG
|||   ||  |  ||   | |||  ||    || || | ||| | |   ||||   | | |      | |  | |   ||| |||  || | |  |  | | ||||||||||||||||| || ||||| || ||| | |||||||| || |||||||| || ||||||||||| |||||| | ||||| |||||||
gtatactggctttttcactatttcaaaag--gtctccatttg-tctctcaatttaaactattgcttttcagaccttgcattgtatcattctgtcttccttatagGGCTTTGGAAGAGAAGAGGGCTCGTCTGGGTCTAGTGGAATGTGTGAACCATGATCTTTTGCAGCCATACCCTGTTCTCCATGAGAAGCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193621810|gb|FK569158.1|FK569158
EST:     ATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAG                         GGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
genomic: ATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGgtaatttgat ... ataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
EST: gi|208249491|gb|GE044596.1|GE044596
EST:     TTCTCTGCTAG                         GGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
genomic: TTCTCTGCTAGgtaatttgat ... ataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
EST: gi|207735203|gb|GD712090.1|GD712090
EST:     ATTTTCAGTGAAATAAGCCAAAAATTTCCAATCATGCCATTCTCTGCTAG                         GGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
genomic: ATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGgtaatttgat ... ataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
EST: gi|193608974|gb|FK561558.1|FK561558
EST:     ATTTTCAGTGAAATAAGCCAAAAATTTCCAATCATGCCATTCTCTGCTAG                         GGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
genomic: ATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGgtaatttgat ... ataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
EST: gi|193713232|gb|FK654427.1|FK654427
EST:     ATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAG                         GGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
genomic: ATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGgtaatttgat ... ataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
EST: gi|208171284|gb|GD971051.1|GD971051
EST:     TTCTCTGCTAG                         GGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
genomic: TTCTCTGCTAGgtaatttgat ... ataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
EST: gi|208336200|gb|GE134271.1|GE134271
EST:     TTCTCTGCTAG                         GGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
genomic: TTCTCTGCTAGgtaatttgat ... ataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
EST: gi|207784767|gb|GD758154.1|GD758154
EST:     ATCATGCCATTCTCTGCTAG                         GGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
genomic: ATCATGCCGTTCTCTGCTAGgtaatttgat ... ataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
EST: gi|193381472|gb|FK347525.1|FK347525
EST:     ATTTTCAGTGAAATAAGCCAAAAATTTCCAATCATGCCATTCTCTGCTAG                         GGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
genomic: ATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGgtaatttgat ... ataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
EST: gi|208247787|gb|GE048521.1|GE048521
EST:     ATTTTCAGTGAAATAAGCCAAAAATTTCCAATCATGCCATTCTCTGCTAG                         GGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
genomic: ATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGgtaatttgat ... ataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
EST: gi|13562960|gb|BG551180.1|BG551180
EST:     ATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAG                         GGCTTTGGAAG
genomic: ATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGgtaatttgat ... ataataacagGGCTTTGGAAG
EST: gi|207797535|gb|GD771249.1|GD771249
EST:     ATTTTCAGTGAAATAAGCCAAAAATTTCCAATCATGCCATTCTCTGCTAG                         GGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
genomic: ATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGgtaatttgat ... ataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
EST: gi|207782981|gb|GD752452.1|GD752452
EST:     ATTTTCAGTGAAATAAGCCAAAAATTTCCAATCATGCCATTCTCTGCTAG                         GGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
genomic: ATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGgtaatttgat ... ataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
EST: gi|193702148|gb|FK640868.1|FK640868
EST:     ATTTTCAGTGAAATAAGCCAAAAATTTCCAATCATGCCATTCTCTGCTAG                         GGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA
genomic: ATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGgtaatttgat ... ataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaattattattgtcatcactattcttaaaattttatttgttttataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG
 tgctaat  putative branch site (score: 2)
              tcatcactattcttaa  TA-rich tract