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gtgggtacaatacacaatagtctcatggtcgttttttatcagaagcttgattggtaaaagtattctcctttacagGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCAGTGGGTGGAGCCCTACTGTCTTATATATATTCCGCGCCTCCTTTAAAG
species | Glycine max |
transcript | GLYMA07G18470.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGGTGTTGCTGCTTGGTGGTCTTTCTCTGGCTGGTATATTGGACATATGG GCAGGGCATGATTTCCCTATAGTATTTTACCTTGCAGTGGGTGGAGCCCTAEST: gi|15589810|gb|BI674426.1|BI674426
genomic: GGGTGTTGCTGCTTGGTGGTCTTTCTCTGGCTGGTATATTGGACATATGGgtgggtacaa ... tcctttacagGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCAGTGGGTGGAGCCCTA
EST: CTGGTATATTGGACATATGG GCAGGGCATGATTTCCCTATAGTATTTTACCTTGCGGTGGGCGGAGCCCTAEST: gi|16276808|gb|BI942055.1|BI942055
genomic: CTGGTATATTGGACATATGGgtgggtacaa ... tcctttacagGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCAGTGGGTGGAGCCCTA
EST: GGGTGTTGCTGCTTGGTGGTCTTTCTCTGGCTGGTATATTGGACATATGG GCAGGGCATGATTTCCCTATAGTATTTTACCTTGCAGTGGGTGGAGCCCTAEST: gi|24205788|gb|BU965041.1|BU965041
genomic: GGGTGTTGCTGCTTGGTGGTCTTTCTCTGGCTGGTATATTGGACATATGGgtgggtacaa ... tcctttacagGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCAGTGGGTGGAGCCCTA
EST: GGGTGTTGCTGCTTGGTGGTCTTTCTCTGGCTGGTATATTGGACATATGG GCAGGGCATGATTTCCCTATAGTATTTTACCTTGCAGTGGGTGGAGCCCTA
genomic: GGGTGTTGCTGCTTGGTGGTCTTTCTCTGGCTGGTATATTGGACATATGGgtgggtacaa ... tcctttacagGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCAGTGGGTGGAGCCCTA
tctcatggtcgttttttatcagaagcttgattggtaaaagtattctcctttacagGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCAGTGGGTGGAGCCCTACTGTCTTATATATATTCCGCGCCTCCTTTAAAG
gcttgat putative branch site (score: 5)
tattctccttt putative PPT
ttttttatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtacaatacacaatagtctcatggtcgttttttatcagaagcttgattggtaaaagtattctcctttacagGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCAGTGGGTGGAGCCCTACTGTCTTATATATATTCCGCGCCTCCTTTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG