Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtaatgaaatttctaactttctaattcaggcataatcaatgtgtaatttttttccctctgactaagcttgcatgaacacagGCTGAGACAACATGGGCTCTAACAGTTCTTGGTTACCTGGCAAAATTTGTTTTGGGAATTTTAGG

Basic information

species Glycine max
transcript GLYMA07G18160.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18160.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 3'ss of exon 7
-----gtcagtaatgaaatttctaact---ttctaattcaggcataatcaatgtgta-atttttttccctctgactaagctt---gcatgaaca---cagGCTGAGACAACATGGGCTCTAACAGTTCTTGGTTACCTGGCAAAATTTGTTTTGGGAATTTTAGG
      || |  || | |||||| | |    ||||  |||   | | ||  | |  | ||||    | ||   |||||  ||   || | ||     ||||||||||| ||||||||| | || || ||||| ||| |||||||| |||| ||||| ||||||||
gtggattctgagat-acatttctgattgacctctatatcaaataaactctcttttgatatttcaacctcttctactaattttcctgcctaaatctttcagGCTGAGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTGTTGGGTATTTTAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21678030|gb|BQ630381.1|BQ630381
EST:     TAGAAGAAGATGTAAAGCTTCTTGAAGAGATGTATCCACAAGGGGAAAAG                         GCTGAGACAACATGGGCTCTAACAGTTCTTGGTTACCTGGCAAATTTTGTT
genomic: TAGAAGAAGATGTAAAGCTTCTTGAAGAGATGTATCCACAAGGGGAAAAGgtcagtaatg ... atgaacacagGCTGAGACAACATGGGCTCTAACAGTTCTTGGTTACCTGGCAAAATTTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caggcataatcaatgtgtaatttttttccctctgactaagcttgcatgaacacagGCTGAGACAACATGGGCTCTAACAGTTCTTGGTTACCTGGCAAAATTTGTTTTGGGAATTTTAGG
                             ctctgac  putative branch site (score: 3)
     ataatcaatgtgtaat  TA-rich tract