1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatggaccttttctcattttttcatatgctcaagttttggtaataatgacatttcatcttattcttaaacatttgtcatacagCAATGGTGAACCTGACAAACCCTTGATTGTTCATGTTGGACGGCTTGGAGTAGAGAAGAGTTTAGATTTTCTGAAAAG
species | Glycine max |
transcript | GLYMA07G17680.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAG CAATGGTGAACCTGACAAACCCTTGATTGTTCATGTTGGACGGCTTGGAGTEST: gi|193701460|gb|FK638219.1|FK638219
genomic: GAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAGgtatggacct ... tgtcatacagCAATGGTGAACCTGACAAACCCTTGATTGTTCATGTTGGACGGCTTGGAGT
EST: GAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAG CAATGATGAACCTGACAAACCCTTGATAATTCATGTTGGACGGCTTGGAGTEST: gi|7590070|gb|AW705831.1|AW705831
genomic: GAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAGgtatggacct ... tgtcatacagCAATGGTGAACCTGACAAACCCTTGATTGTTCATGTTGGACGGCTTGGAGT
EST: GAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAG CAATGGTGAACCTGACAAACCCTTGATTGTTCATGTTGGACGGCTTGGAGT
genomic: GAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAGgtatggacct ... tgtcatacagCAATGGTGAACCTGACAAACCCTTGATTGTTCATGTTGGACGGCTTGGAGT
ctcaagttttggtaataatgacatttcatcttattcttaaacatttgtcatacagCAATGGTGAACCTGACAAACCCTTGATTGTTCATGTTGGACGGCTTGGAGTAGAGAAGAGTTTAGATTTTCTGAAAAG
ttattcttaaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggaccttttctcattttttcatatgctcaagttttggtaataatgacatttcatcttattcttaaacatttgtcatacagCAATGGTGAACCTGACAAACCCTTGATTGTTCATGTTGGACGGCTTGGAGTAGAGAAGAGTTTAGATTTTCTGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG