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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctataatttatcagacttgtgggtttaggaatgtaaattaactgtttaccaacattattttgatatttatgatccgtgaaactaattgcattagagtagcaattaattaatgattcaccctgattatccatacagGAAGTCAGAAGGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACCATAGATAATGATATCCCG

Basic information

species Glycine max
transcript GLYMA07G15170.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7591258|gb|AW706995.1|AW706995
EST:     ATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAG                         GAAGTCAGAAGGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC
genomic: ATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctataa ... atccatacagGAAGTCAGAAGGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaattgcattagagtagcaattaattaatgattcaccctgattatccatacagGAAGTCAGAAGGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACCATAGATAATGATATCCCG
                    aattaattaatgattc  TA-rich tract