Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacttaagaatattgggagtacgcataactggaatttcatttgaccattctattcaattttctgatttatgaattttaattttgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCATTCATGAAGGGTCGCCTTTACATCCAATTTAATGTTGATTTCCCCGACTC

Basic information

species Glycine max
transcript GLYMA07G14540.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G14540.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0021g02090.t01 (Vitis vinifera), 3'ss of exon 7
gtaatacttaagaatattgggagtacgcataactggaatttcatttgaccatt-ctattcaattttctgatttatgaattttaattttgct-atgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCATTCATGAAGGGTCGCCTTTACATCCAATTTAATGTTGATTTCCCCGACTC
|||| | | |  || |         |   ||  ||   ||  ||   | ||||  |  ||||| |  | ||       |  || |||     |||||| |||||| |||||| | ||||||||||||||||| || ||| | || || ||||||||||||   ||||||||||| ||| |||| || ||||| || ||
gtaaaaatcactaaaagcaatttcccttgtacttgctcttggatgaaaacattattcctcaatatgttcatcatcccttggtactttcatggatgcagATCAATACAAAGCAATCAATGATGAGGGAATGCCGCACCACCAAAGACCCTTCATGAAGGGTAAGCTTTACATCCATTTTGATGTGGAGTTCCCAGAGTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208169495|gb|GD970984.1|GD970984
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|22521806|gb|BU080617.1|BU080617
EST:     TGGTATGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GCCAATATTAAGCATTAAATGATGA
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGA
EST: gi|254327987|gb|GR834952.1|GR834952
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATATGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|193422676|gb|FK385893.1|FK385893
EST:     ATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: ATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|254327122|gb|GR836731.1|GR836731
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|22524464|gb|BU083275.1|BU083275
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|192328757|gb|FK022543.1|FK022543
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|7589498|gb|AW705279.1|AW705279
EST:     GGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: GGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|298194584|gb|HO043056.1|HO043056
EST:     TGGTAGGCAACTATCGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|254343846|gb|GR857602.1|GR857602
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|192319147|gb|FK010655.1|FK010655
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|58023827|gb|CX710568.1|CX710568
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|5770887|gb|AI974061.1|AI974061
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCA-TATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|298195828|gb|HO044219.1|HO044219
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|254327121|gb|GR836730.1|GR836730
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|19453018|gb|BM954428.1|BM954428
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|11687347|gb|BF594987.1|BF594987
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGNGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|22524662|gb|BU083473.1|BU083473
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|7589231|gb|AW705009.1|AW705009
EST:     GCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: GCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|207814816|gb|GD789061.1|GD789061
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|298179173|gb|HO027644.1|HO027644
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCTACAAC
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAAC
EST: gi|208313686|gb|GE114646.1|GE114646
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|298186346|gb|HO036979.1|HO036979
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCA
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCA
EST: gi|254341869|gb|GR853006.1|GR853006
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCCACAACACAATAGGCCA
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATG-CCACAACACAATAGGCCA
EST: gi|21887547|gb|BQ740760.1|BQ740760
EST:     CATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: CATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|7147466|gb|AW509388.1|AW509388
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|254327988|gb|GR834953.1|GR834953
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|9564341|gb|BE473850.1|BE473850
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|6724797|gb|AW309196.1|AW309196
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|21887538|gb|BQ740751.1|BQ740751
EST:     CATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: CATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|26058372|gb|CA801286.1|CA801286
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|23731039|gb|BU763629.1|BU763629
EST:     CATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: CATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
EST: gi|16996472|gb|BM085844.1|BM085844
EST:     TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAG                         GTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT
genomic: TGGTAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTCATCAAGCCAGgtaatactta ... tgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttgaccattctattcaattttctgatttatgaattttaattttgctatgcagGTCAATATAAAGCATTAAATGATGAGGGAATGCCACAACACAATAGGCCATTCATGAAGGGTCGCCTTTACATCCAATTTAATGTTGATTTCCCCGACTC
                                    ttttaat  putative branch site (score: 3)
                                          ttttgct  CT-rich tract
         attctattcaattttc  TA-rich tract