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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttaatacttatttgtttcccttttagtgccttaccttcttgtcatcatcatttcagcttcataaattactctaagcatctgatctgtttttctaatgaatgttacagCAAAACTTGTTGAACTTATAATTGGAGCTCAAACACGATACACTTACATGTCAGGATCGTGAATAAAATCCAGAACAAATGCCTAATTGCCCTCCAAGAT

Basic information

species Glycine max
transcript GLYMA07G08700.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6913641|gb|AW395171.1|AW395171
EST:     AAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGGATTTCTCACAG                         CAAAACTTGTTGAACTTATAATTGGAGCTCAGACACGATACACTTACATGT
genomic: AAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGGATTTCTCACAGgtgagcttaa ... aatgttacagCAAAACTTGTTGAACTTATAATTGGAGCTCAAACACGATACACTTACATGT
EST: gi|7589693|gb|AW705462.1|AW705462
EST:     AAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGGATTTCTCACAG                         CAAAACTTGTTGAACTTATAATTGGAGCTCAAACACGATACACTTACATGT
genomic: AAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGGATTTCTCACAGgtgagcttaa ... aatgttacagCAAAACTTGTTGAACTTATAATTGGAGCTCAAACACGATACACTTACATGT
EST: gi|15664588|gb|BI701959.1|BI701959
EST:     AAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGGATTTCTCACAG                         CAAAACTTGTTGAACTTATAATTGGAGCTCAAACACGATACACTTACATGT
genomic: AAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGGATTTCTCACAGgtgagcttaa ... aatgttacagCAAAACTTGTTGAACTTATAATTGGAGCTCAAACACGATACACTTACATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagcttcataaattactctaagcatctgatctgtttttctaatgaatgttacagCAAAACTTGTTGAACTTATAATTGGAGCTCAAACACGATACACTTACATGTCAGGATCGTGAATAAAATCCAGAACAAATGCCTAATTGCCCTCCAAGAT
                                     ttctaat  putative branch site (score: 2)
        ataaattactctaa  TA-rich tract