Sequence
atgc intronic sequence ATGC exonic sequencegtaagttcagccacttacaacatatcaagttgaaaaataacaaaaaagacattacgaggtcatttttttacaaatgatgaacattttaggacaccatgatatggatatctattgtagaaactagcagatatctagattatgaactcatggactaagaatgagtattatcttctgcagGATGTAGGAAAAGCGATATTAGAAAGCTACTCAAGAGTATTAGAAGGCTTAGCATTCAACATTGTAGCTTGGATTGAAGATGTTCTTCTTGCTGATAAAT
Basic information
species | Glycine max |
transcript | GLYMA07G07980.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G07980.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G00460.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagttcagccacttacaacatatcaagttgaaaaataacaaaaaagacattacgaggtcatttttttacaaatgatgaacattttaggacaccatgatatggatatctattgtagaaactagcagatatctagattatgaactcatggactaagaatgagtattatcttctgcagGATGTAGGAAAAGCGATATTAGAAAGCTACTCAAGAGTATTAGAAGGCTTAGCATTCAACATTGTAGCTTGGATTGAAGATGTTCTTCTTGCTGATAAAT
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-------------------------------------------------------------------------------------gtaaaa-actgaagaataga-gtgtctcattgaatttgatagtacactatagtaattacttaaaaagtgt---tgtgctttttggtttgcagGATGTTGGAAAAGCTGTGTTGGAGAGCTACTCAAGAGTACTTGAAGGTTTAGCTTTTAACATAGTTGCTTGGATTGATGATGTTCTCTATGTAGACAAAA
upper sequence: GLYMA07G07980.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G01700.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagttcagccacttacaacatatcaagttgaaaaataacaaaaaagacattacgaggtcatttttttacaaatgatgaacattttaggacaccatgatatggatatctattgtagaaactagcagatatctagattatgaactcatggac----taagaatgagta--ttatcttctgcagGATGTAGGAAAAGCGATATTAGAAAGCTACTCAAGAGTATTAGAAGGCTTAGCATTCAACATTGTAGCTTGGATTGAAGATGTTCTTCTTGCTGATAAAT
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------------------------------------------------------------------------------------------------------------gtaattaagaaacaaacagtgacctgaatcatgttttattgaatattataacaatttatggtttgtggtttgcagGATGTTGGAAAAGCTGTGTTAGAGAGTTATTCAAGAGTTCTTGAAGGTTTAGCTTTTAACATAGTTGCTTGGATTGATGATGTTCTTTATGTAGACAAAA
upper sequence: GLYMA07G07980.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0046g02530.t01 (Vitis vinifera), 3'ss of exon 6
gtaagttcagccacttacaacatatcaagttgaaaaataacaaaaaagacattacgaggtcatttttttacaaatgatgaacattttaggacaccatgatatggatatctattgtagaaactagcagatatctagattatgaactcatggactaagaatgagtattatcttctgcagGATGTAGGAAAAGCGATATTAGAAAGCTACTCAAGAGTATTAGAAGGCTTAGCATTCAACATTGTAGCTTGGATTGAAGATGTTCTTCTTGCTGATAAAT
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----------------------------------------------------------------------------gtgagcaact---gcatccaaattactaaaagcta----aaattccaggaaa-atcatgagtagaaaat----gact--gaaaggaaaatatttgttgcagGATGTCGGGCAGGCGATCCTGGAGAGCTACTCTAGAGTGTTGGAAAGTCTAGCATTCAGCATTGTTGCTTGGATTGAAGATGTATTACATGAAGACAGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192309282|gb|FG999481.1|FG999481EST: CTGAACTTTCACAAACATCATTGGACACATGCAAAATTCAATACAACCAG GATGTAGGAAAAGCGATATTAGAAAGCTACTCAAGAGTGTTAGAAGGCTTA
genomic: CTGAACTTTCACAAACATCATTGGACACATGCAAAATTCAATACAACCAGgtaagttcag ... tcttctgcagGATGTAGGAAAAGCGATATTAGAAAGCTACTCAAGAGTATTAGAAGGCTTA
EST:
gi|51336488|gb|CO980354.1|CO980354EST: CTGAACTTTCACAAACATCATTGGACACATGCAAAATTCAATACAACCAG GATGTAGGAAAAGCGATATTAGAAAGCTACTCAAGAGTATTAGAAGGCTTA
genomic: CTGAACTTTCACAAACATCATTGGACACATGCAAAATTCAATACAACCAGgtaagttcag ... tcttctgcagGATGTAGGAAAAGCGATATTAGAAAGCTACTCAAGAGTATTAGAAGGCTTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcagatatctagattatgaactcatggactaagaatgagtattatcttctgcagGATGTAGGAAAAGCGATATTAGAAAGCTACTCAAGAGTATTAGAAGGCTTAGCATTCAACATTGTAGCTTGGATTGAAGATGTTCTTCTTGCTGATAAAT
ttatcttct CT-rich tract
tattatctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttcagccacttacaacatatcaagttgaaaaataacaaaaaagacattacgaggtcatttttttacaaatgatgaacattttaggacaccatgatatggatatctattgtagaaactagcagatatctagattatgaactcatggactaagaatgagtattatcttctgcagGATGTAGGAAAAGCGATATTAGAAAGCTACTCAAGAGTATTAGAAGGCTTAGCATTCAACATTGTAGCTTGGATTGAAGATGTTCTTCTTGCTGATAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT