Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcacgagaaaagattttattttgtatcagtcttctgtgttgtttaatgcaatttttcatcttgttgttgacaaccttattttatattttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATACATCAAGCGTGGGATAGAAGCTGATGGTATTGAGGCACTGTATAAAAATG

Basic information

species Glycine max
transcript GLYMA07G06590.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208084710|gb|GD879256.1|GD879256
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208177153|gb|GD974404.1|GD974404
EST:     GCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: GCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|207731612|gb|GD707995.1|GD707995
EST:     GGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTAATATGAAG                         ATCTTGGCGGAAGATG
genomic: GGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTA-TATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATG
EST: gi|207709318|gb|GD689568.1|GD689568
EST:     TTGGTGGACATGTTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: TTGGTGGACATG-TTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208333314|gb|GE132799.1|GE132799
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCTGAGAAAT
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAAT
EST: gi|207735753|gb|GD713060.1|GD713060
EST:     CGGAAATANG-TTTTGGTGGACANGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: CGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208067369|gb|GD861369.1|GD861369
EST:     AGGTTCATCGGAAATATG-TTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|207764814|gb|GD738517.1|GD738517
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|207697985|gb|GD681050.1|GD681050
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208106423|gb|GD906450.1|GD906450
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208277662|gb|GE074837.1|GE074837
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGGAG                         ATCTTGGCGGAAGATGAA
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAA
EST: gi|193490560|gb|FK454173.1|FK454173
EST:     AGGTTCATCGGAAATATGTTTT-GGTGGACATGTTGCTGCCTATATGAAG                         ATCATGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|207753576|gb|GD725988.1|GD725988
EST:     CGGAAATANGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ANCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: CGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|207819312|gb|GD792774.1|GD792774
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAA
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAA
EST: gi|193385756|gb|FK349424.1|FK349424
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193517809|gb|FK473028.1|FK473028
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|6566946|gb|AW234576.1|AW234576
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208254161|gb|GE051631.1|GE051631
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAG
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAG
EST: gi|254340071|gb|GR858196.1|GR858196
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|207846494|gb|GD820715.1|GD820715
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193651018|gb|FK597583.1|FK597583
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208274649|gb|GE067553.1|GE067553
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|254323520|gb|GR835966.1|GR835966
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193731522|gb|FK665348.1|FK665348
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193341144|gb|FK307952.1|FK307952
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|18039738|gb|BM308032.1|BM308032
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208055285|gb|GD854968.1|GD854968
EST:     TTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: TTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|33388086|gb|CA851293.1|CA851293
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|58015725|gb|CX702467.1|CX702467
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|207745229|gb|GD715933.1|GD715933
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCA
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCA
EST: gi|208214878|gb|GE014189.1|GE014189
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAGTACCAGTCA
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCA
EST: gi|193491156|gb|FK453789.1|FK453789
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193385687|gb|FK350279.1|FK350279
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACA
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACA
EST: gi|308099024|gb|HO760865.1|HO760865
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193435754|gb|FK399414.1|FK399414
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAAGTACACACTTCAG
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCA-GT-CACACTTCAG
EST: gi|18039402|gb|BM307705.1|BM307705
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193686566|gb|FK625581.1|FK625581
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAG
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAG
EST: gi|26059202|gb|CA802116.1|CA802116
EST:     GGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTAAATAC
genomic: GGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193637855|gb|FK578587.1|FK578587
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208068803|gb|GD864133.1|GD864133
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAA
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAA
EST: gi|193337252|gb|FK303304.1|FK303304
EST:     GTTTTTGGTTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: GTTTTTGG-TGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|38193488|gb|CF922694.1|CF922694
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|21993617|gb|BQ785145.1|BQ785145
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|14259153|gb|BG882061.1|BG882061
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193419596|gb|FK384002.1|FK384002
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGA
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGA
EST: gi|17964295|gb|BM271032.1|BM271032
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|207817216|gb|GD789289.1|GD789289
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAG
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAG
EST: gi|193335907|gb|FK300607.1|FK300607
EST:     AGGTTCATCGGAAATANGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|254323521|gb|GR835967.1|GR835967
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193460403|gb|FK426206.1|FK426206
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAA
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAA
EST: gi|8282908|gb|BE020469.1|BE020469
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193301186|gb|FK268577.1|FK268577
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAG
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAG
EST: gi|193510524|gb|FK468030.1|FK468030
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|19054182|gb|BM732849.1|BM732849
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208067812|gb|GD866152.1|GD866152
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAG
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAG
EST: gi|193409290|gb|FK374540.1|FK374540
EST:     TTCATCGGAAATANGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: TTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|58014783|gb|CX701525.1|CX701525
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|207686821|gb|GD668403.1|GD668403
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208227540|gb|GE022765.1|GE022765
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193696610|gb|FK640244.1|FK640244
EST:     TTGCTGCCTATATGAAG                         ANCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: TTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193339058|gb|FK304391.1|FK304391
EST:     AGGTTCATCGGAAATANGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193674217|gb|FK619423.1|FK619423
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|192333817|gb|FK025078.1|FK025078
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGGTGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208274758|gb|GE066360.1|GE066360
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAA
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAA
EST: gi|193354898|gb|FK322507.1|FK322507
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAAGTACACACTTCAG
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCA-GT-CACACTTCAG
EST: gi|193334427|gb|FK300919.1|FK300919
EST:     TTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAGATACCAGTCACACTTCAGTGAATAC
genomic: TTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208190409|gb|GD994095.1|GD994095
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCA
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCA
EST: gi|207793475|gb|GD765647.1|GD765647
EST:     AGGTTCATCGGAAATATGTTTTTGGCGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGT
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGT
EST: gi|208104126|gb|GD902255.1|GD902255
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACA
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACA
EST: gi|207697840|gb|GD680009.1|GD680009
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|207730539|gb|GD706012.1|GD706012
EST:     GGGTTCATCGGAAATATGTTTT-GGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATA
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATA
EST: gi|208209768|gb|GE006377.1|GE006377
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAG
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAG
EST: gi|207799136|gb|GD768177.1|GD768177
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAGCCAGAG
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAG
EST: gi|207842732|gb|GD817300.1|GD817300
EST:     GGTTCATACGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATA
genomic: GGTTCAT-CGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATC-TTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATA
EST: gi|208031871|gb|GD829853.1|GD829853
EST:     TTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: TTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|15814118|gb|BI786393.1|BI786393
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208322928|gb|GE125601.1|GE125601
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAA
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAA
EST: gi|193708078|gb|FK648096.1|FK648096
EST:     GGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: GGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|9258280|gb|BE346427.1|BE346427
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208262894|gb|GE062062.1|GE062062
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193305607|gb|FK270964.1|FK270964
EST:     CTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: CTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|207843520|gb|GD815679.1|GD815679
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGA
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGA
EST: gi|208037319|gb|GD836620.1|GD836620
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAA
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAA
EST: gi|16347188|gb|BI972783.1|BI972783
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193550450|gb|FK509265.1|FK509265
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCATGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|15814198|gb|BI786473.1|BI786473
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208214470|gb|GE011961.1|GE011961
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCTGAGAAATA
genomic: AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcacgagaaa ... ttttctgcagATCTTGGCGGAAGATGAACCAGAGAAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttaatgcaatttttcatcttgttgttgacaaccttattttatattttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATACATCAAGCGTGGGATAGAAGCTGATGGTATTGAGGCACTGTATAAAAATG
                        tgttgac  putative branch site (score: 3)
                                           tattttct  putative PPT
                               aaccttattttatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcacgagaaaagattttattttgtatcagtcttctgtgttgtttaatgcaatttttcatcttgttgttgacaaccttattttatattttctgcagATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATACATCAAGCGTGGGATAGAAGCTGATGGTATTGAGGCACTGTATAAAAATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT