Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgcgagaagattttattttgtatcagtcttgtgttgtttaatgcaatatttggatttttagctagttgttagacaaccttattttatattttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATACATCAAGCGTGGGATAGAAGCTGATGGTATTGAGGCACTGTATAAGAAGG

Basic information

species Glycine max
transcript GLYMA07G06580.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM5G815894_T03 (Zea mays), 3'ss of exon 7
---------gcatgcgagaagattttattttgtatcagtcttgtgttgttta-atgcaatatttggatttttagctagttg--ttagacaaccttattttatattttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATACATCAAGCGTGGGATAGAAGCTGATGGTATTGAGGCACTGTATAAGAAGG
         || |||  | | ||   ||  | | ||| |    | ||||||   |  | || |  ||||| ||   | |||  || |      || |  | | | |    |||| | | |||||||| || |||||||| |||||||| ||||||||||| ||||| |||   || || || |||||||  || || || ||||| |||||||
gttagttgtgcttgct-gcatatcacatcatatttcatttcctttttgtttttgtaaactaatctgatttatactcaattgatttcgttgttattttgatctttatctcccagAACCTCGCTGAAGAGGAGCCAGAGAAGTACCAGTCTCACTTCAGTGAGTACATTAAGAAGGGAATTGAGGCTGATGACATGGAAGCTCTGTACAAGAAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208136770|gb|GD935054.1|GD935054
EST:     GGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATTATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATAC
genomic: GGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTAT-ATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATAC
EST: gi|298180774|gb|HO022213.1|HO022213
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGTTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193687485|gb|FK629200.1|FK629200
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAG
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAG
EST: gi|193688010|gb|FK631769.1|FK631769
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAA
EST: gi|193391029|gb|FK353282.1|FK353282
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAA
EST: gi|208216253|gb|GE009371.1|GE009371
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|21257166|gb|BQ454054.1|BQ454054
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|8283526|gb|BE021085.1|BE021085
EST:     GTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: GTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|21257394|gb|BQ454282.1|BQ454282
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193481493|gb|FK445548.1|FK445548
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208175265|gb|GD975946.1|GD975946
EST:     TTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: TTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|38192446|gb|CF921652.1|CF921652
EST:     AGGTTCATCGCANATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193713409|gb|FK651916.1|FK651916
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAA
EST: gi|10231886|gb|BE800774.1|BE800774
EST:     AAGTTCATCGCAGATATGTTTCTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|10232170|gb|BE801058.1|BE801058
EST:     AGGTTCATCGCAAATATGTTTGTGGTGGACATGTTGCTGCCTATATGAAG                         ATTTTGGCTGAAGATGAACCAAAGAAATACCAGTCACACTTCAGT
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGT
EST: gi|193620607|gb|FK569535.1|FK569535
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193424498|gb|FK388933.1|FK388933
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAA
EST: gi|298175318|gb|HO015977.1|HO015977
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTACCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|151409715|gb|EV279523.1|EV279523
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193637490|gb|FK584919.1|FK584919
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGT
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGT
EST: gi|192333816|gb|FK025077.1|FK025077
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAG-TGAACCAGAGAAATACCAGTCACACTTCAGTGA-TAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|26058287|gb|CA801201.1|CA801201
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCA
EST: gi|208296779|gb|GE095689.1|GE095689
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAG
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAG
EST: gi|10848276|gb|BF070811.1|BF070811
EST:     GTTCATCGCAAATATGTTTTCTGGTG-ACATGTTGCTTGC-TATATGAAG                         ATCTTGGCTGAAGATGAACGATAGAAATACCA
genomic: GTTCATCGCAAATATGTTTT-TGGTGGACATGTTGCT-GCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCA
EST: gi|207711886|gb|GD693700.1|GD693700
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCNGAGAAAT
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAAT
EST: gi|208049782|gb|GD844989.1|GD844989
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|207741118|gb|GD717114.1|GD717114
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATG
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATG
EST: gi|19269143|gb|BM885399.1|BM885399
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193366595|gb|FK331939.1|FK331939
EST:     AGGTTCATCGCAATTATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAG
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAG
EST: gi|38193704|gb|CF922910.1|CF922910
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|8402646|gb|BE058280.1|BE058280
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208069204|gb|GD870008.1|GD870008
EST:     GTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: GTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208247258|gb|GE048930.1|GE048930
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAG
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAG
EST: gi|207809554|gb|GD782286.1|GD782286
EST:     TGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: TGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|4396972|gb|AI495969.1|AI495969
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193477553|gb|FK441912.1|FK441912
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGNTGAACCAG
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAG
EST: gi|208288099|gb|GE083062.1|GE083062
EST:     AGGTTCATCGCAAATNTGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAG
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAG
EST: gi|193673550|gb|FK617775.1|FK617775
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193315172|gb|FK282568.1|FK282568
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193348433|gb|FK314373.1|FK314373
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAG
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAG
EST: gi|151411465|gb|EV281276.1|EV281276
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGGCATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193582836|gb|FK542264.1|FK542264
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAAC
EST: gi|208271853|gb|GE070945.1|GE070945
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193710547|gb|FK645611.1|FK645611
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACC
EST: gi|193334761|gb|FK300581.1|FK300581
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208125327|gb|GD923731.1|GD923731
EST:     AGGTTCATCGCAAATANGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193729848|gb|FK663002.1|FK663002
EST:     AGGTTCATCGCAAATATGTTTT-GGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACC
EST: gi|193723939|gb|FK656317.1|FK656317
EST:     AGGTTCATCGCAAATATGTTTTTGGNGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGNTGAACCAG
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAG
EST: gi|207765121|gb|GD738992.1|GD738992
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193641577|gb|FK592403.1|FK592403
EST:     AGGTTCATCGCAAATATGTTTT-GGNGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAG
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAG
EST: gi|27426959|gb|CA938479.1|CA938479
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193529149|gb|FK484340.1|FK484340
EST:     TTTTTGGTTGGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTAGAATA
genomic: TTTTTGG-T-GGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGT-GAATA
EST: gi|208259039|gb|GE057544.1|GE057544
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208036993|gb|GD833522.1|GD833522
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208113312|gb|GD911119.1|GD911119
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAAGATGAACCAG
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAA-GATGAACCAG
EST: gi|38193290|gb|CF922496.1|CF922496
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193707788|gb|FK646842.1|FK646842
EST:     AGGTTCATCGCAAATATGTTTT-GGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACC
EST: gi|208188949|gb|GD987329.1|GD987329
EST:     CAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: CAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208140472|gb|GD939868.1|GD939868
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|38192834|gb|CF922040.1|CF922040
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193408875|gb|FK372809.1|FK372809
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAG
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAG
EST: gi|208185414|gb|GD981648.1|GD981648
EST:     GGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: GGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|8827338|gb|BE211068.1|BE211068
EST:     GTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: GTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193378720|gb|FK344753.1|FK344753
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAAGTGAATA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCA-GTGAATA
EST: gi|207741050|gb|GD715310.1|GD715310
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208150352|gb|GD950285.1|GD950285
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAAGAATAGAACCAGAGAAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAA-GA-T-GAACCAGAGAAATAC
EST: gi|208296931|gb|GE095323.1|GE095323
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208065041|gb|GD862999.1|GD862999
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGAATAGAACCAGAGAAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGA-T-GAACCAGAGAAATAC
EST: gi|207781300|gb|GD752339.1|GD752339
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208195512|gb|GD993443.1|GD993443
EST:     CTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: CTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208309843|gb|GE105119.1|GE105119
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAG
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAG
EST: gi|193605093|gb|FK556407.1|FK556407
EST:     AGGTTCATCGGAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208060460|gb|GD860008.1|GD860008
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATAC
EST: gi|298183141|gb|HO028404.1|HO028404
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|151410521|gb|EV280336.1|EV280336
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|208195621|gb|GD991256.1|GD991256
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGA
EST: gi|208033677|gb|GD831966.1|GD831966
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193317875|gb|FK283717.1|FK283717
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|6849003|gb|AW351293.1|AW351293
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATAC
EST: gi|193388622|gb|FK357511.1|FK357511
EST:     CCTATATGAAG                         ANCTTGGCTGAAGATGAACCAGAGGAAATACCAGTCACACTTCAGTGAATA
genomic: CCTATATGAAGgcatgcgaga ... ttttctgcagATCTTGGCTGAAGATGAACCAGA-GAAATACCAGTCACACTTCAGTGAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatatttggatttttagctagttgttagacaaccttattttatattttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATACATCAAGCGTGGGATAGAAGCTGATGGTATTGAGGCACTGTATAAGAAGG
                                           tattttct  CT-rich tract
                               aaccttattttatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcatgcgagaagattttattttgtatcagtcttgtgttgtttaatgcaatatttggatttttagctagttgttagacaaccttattttatattttctgcagATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATACATCAAGCGTGGGATAGAAGCTGATGGTATTGAGGCACTGTATAAGAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG