1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttaaattctaaaactgtgatttgacaacaaaaggttttactttttctatcacatttcacatattttatgaagatatgtaatgtagctattggtttatcagGTCCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAACTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTC
species | Glycine max |
transcript | GLYMA07G06240.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TACTATATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAG GTCCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAACTTEST: gi|20813627|gb|BQ298105.1|BQ298105
genomic: TACTATATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAGgtatgctttc ... ggtttatcagGTCCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAACTT
EST: TACTGTATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAG GTTCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAACTT
genomic: TACTATATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAGgtatgctttc ... ggtttatcagGTCCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAACTT
ctatcacatttcacatattttatgaagatatgtaatgtagctattggtttatcagGTCCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAACTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTC
atattttatgaagata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaattctaaaactgtgatttgacaacaaaaggttttactttttctatcacatttcacatattttatgaagatatgtaatgtagctattggtttatcagGTCCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAACTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - tgatttg
- - - - - - - - - - - - -aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgtag