Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccttaaaaatcttattccaataacttgatacatgagtttctttaagattacttcatagtattttcataaaaaaaataaaaaattgagtgcatttcttaatatattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT

Basic information

species Glycine max
transcript GLYMA07G05390.1
intron # 7
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05390.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os05g36260.1 (Oryza sativa), 3'ss of exon 5
gtatccttaaaaatcttattccaataacttgatacatgagtttctttaagattacttcatagtattttcataaaaaaaataaaaaattgagtgcatttcttaatatattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT
|||  | |           ||  |  | ||| |||||     | |||| | ||  |  || | |  || ||        | ||   ||   | | ||  | || || ||  ||||||||||||||||||||||||||||| || || ||||| ||  | |||||  | || ||   |||| | ||||||||||| ||
gtacgcctgcttcctcagctcatacga-ttgctacat-----tttttatgcttggt--attgcaccttgatt-------tcaattgttttattc-ttgatcaaaatctt--tcagACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCTTGCCTGCTCCGACAGCTCGTGAAGCAATCCAGTACTCTAT

upper sequence: GLYMA07G05390.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os04g59040.1 (Oryza sativa), 3'ss of exon 7
gtatccttaaaaatcttattccaataacttgatacatgagtttctttaagattacttcatagtattttcataaa-aaaaataaaaaattgagtgcatttcttaatatattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT
                ||| |  |||    | |  |||  ||   ||     | |   |||||||  |  |    |   ||| |    | | ||   ||   ||||| ||  | ||||||||||||||||||||||||||| || ||| |||  ||  | |||||   ||||||   |||  |||| |||||||| ||
---------------gtatcctcatagtccgttttatggtttaaattgcatatcccatatagtatagtattggtcatgcatacatctgttattgtccttaacaatatgttt-ttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAACACTGCTCGTGACGCCATTCAGTACTCCAT

upper sequence: GLYMA07G05390.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os01g64670.1 (Oryza sativa), 3'ss of exon 6
gtatccttaaaaatcttattccaataacttgatacatgagtttctttaagattacttcatagtattttcataaaaaaaataaaaaattgagtgcatttcttaatatattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT
                | |||| |  | ||   | ||   |    | |  | |  || ||    | ||| |         |   || |  ||   ||||| ||  ||||   |||||||||||||||| ||||||||||| || || |||||  | || ||||   || ||||    ||  |||||||||| || ||
-------------gtatgttcctactagttctcaaatcgctgcactgaccaatgttttat----tcttctt--------cagctaactctgta-gtttctgaacttatt---cagACAAGAAGAATGAAAACAAGGAGGTCGCCGTGAATGAGGTACTGCCTGTGACCGCTGCTCGGGATGCCATCCAGTATTCCAT

upper sequence: GLYMA07G05390.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os01g64670.3 (Oryza sativa), 3'ss of exon 6
gtatccttaaaaatcttattccaataacttgatacatgagtttctttaagattacttcatagtattttcataaaaaaaataaaaaattgagtgcatttcttaatatattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT------------------
                | |||| |  | ||   | ||   |    | |  | |  || ||    | ||| |         |   || |  ||   ||||| ||  ||||   |||||||||||||||| ||||||||||| || || |||||  | || ||||   || ||||    ||  |||||||||| || ||                  
-------------gtatgttcctactagttctcaaatcgctgcactgaccaatgttttat----tcttctt--------cagctaactctgta-gtttctgaacttatt---cagACAAGAAGAATGAAAACAAGGAGGTCGCCGTGAATGAGGTACTGCCTGTGACCGCTGCTCGGGATGCCATCCAGTATTCCATGTAAGTGATGAACTGTCC

upper sequence: GLYMA07G05390.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G01480.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatccttaaaaatcttattccaataacttgatacatgagtttctttaagat-tacttca-tagtattttcataaaaaaaataaaaaattgagtgcatttcttaat--atattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT
                                       || || |||| |  || || | || |   ||   ||| ||||  |    ||   |||  |  ||||   | ||  | ||||||||||||||||||||||||| || ||||| |||||||||||||   |     ||||  ||||| |||| |||||||||||
---------------------------------------gtatccttaaaacctattttaatacttgattaggaaacaaaaccatttcttttttgctatctttaaccaaaatataacagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAATGATTTTCTACAACCTGGTCCTGCTATTGAAGCCATTCAGTACTCAAT

upper sequence: GLYMA07G05390.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G01050.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatccttaaaaatcttattccaataacttgatacatgagt-ttctttaagattacttcatagtattttcataaaaaaaataaaaaattgagtgcatttcttaatatattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT
                        || | |  | | | ||| ||| |    |||  |   || |  | ||  || ||  || |    ||   |  |  ||| ||||| ||   |||||||||| || ||||||||||| || ||||| ||||||||||| ||  |     |||| |||||| | ||||||||||||||
-----------------------gtatcctttttcttcagtgttcctccttattcatctctattgatctctcaacaagtattagtttttccctttaactct-aatatctta--cagACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAAT

upper sequence: GLYMA07G05390.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S315_67V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------------gtatccttaaaaatcttattccaataacttgatacatgagtttctttaagattacttcatagtattttcataaaaaaaataaaaaattgagtgcatttcttaatatattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT
                     |      |    ||  |  ||||| |  | ||     |||        || |  |||     | |  | ||     |  |    ||  |   |   |   |      |  ||||||||||||||||||||||||||| ||| | ||  || | || ||           ||||  || || |||||    |||| ||
gtaagtgccgagtgaggtgacgcggtgatgtgcataatggtccaagatgtggacgtgagagagg----gaggtgtctttgct-tgtggtgatgtgtgacgtttgtaaccggcagggatgggtttggggtgaatcagACAAGAAGAATGAGAACAAGGAAGTAACGGTGGATAACTTCCTGGGCCACGAAGCTGCGATTCAAGCCATCAGTCACTCCAT

upper sequence: GLYMA07G05390.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S552_1V6.1 (Physcomitrella patens), 3'ss of exon 7
---------------------gtatccttaaaaatcttattccaataacttgatacatgagtttctttaagattacttcatagtattttcataaaaaaaataaaaaattgagtgcatttcttaatatattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT
                     |      |    ||  |  ||||| |  | ||     |||        || |  |||     | |  | ||     |  |    ||  |   |   |   |      |  ||||||||||||||||||||||||||| ||| | ||  || | || ||           ||||  || || |||||    |||| ||
gtaagtgccgagtgaggtgacgcggtgatgtgcataatggtccaagatgtggacgtgagagaga----gaggtgtctttgct-tgtggtgatgtgtgacgtttgtaaccggcagggatgggtttggggtgaatcagACAAGAAGAATGAGAACAAGGAAGTAACGGTGGATAACTTCCTGGGCCACGAAGCTGCGATTCAAGCCATCAGTCACTCCAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8401989|gb|BE057623.1|BE057623
EST:     AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
genomic: AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATTgtatccttaa ... tattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
EST: gi|254315135|gb|GR830128.1|GR830128
EST:     AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
genomic: AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATTgtatccttaa ... tattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
EST: gi|254344222|gb|GR851025.1|GR851025
EST:     AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
genomic: AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATTgtatccttaa ... tattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
EST: gi|17400209|gb|BM176991.1|BM176991
EST:     GAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTNGA-GATT                         ACAAGAAGAATGAGAAACA-GGAGGTAGCAGTTAATGATTTT
genomic: GAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTT-GAAGATTgtatccttaa ... tattgatcagACAAGAAGAATGAGAA-CAAGGAGGTAGCAGTTAATGATTTT
EST: gi|254315134|gb|GR830127.1|GR830127
EST:     AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATT                         ACA-GAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTT-CTACCTGCAT
genomic: AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATTgtatccttaa ... tattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
EST: gi|254344223|gb|GR851026.1|GR851026
EST:     AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
genomic: AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATTgtatccttaa ... tattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
EST: gi|18040990|gb|BM309284.1|BM309284
EST:     AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
genomic: AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATTgtatccttaa ... tattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
EST: gi|209698574|gb|BW652427.1|BW652427
EST:     AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
genomic: AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATTgtatccttaa ... tattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
EST: gi|151399288|gb|EV269159.1|EV269159
EST:     AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
genomic: AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATTgtatccttaa ... tattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
EST: gi|5666812|gb|AI930848.1|AI930848
EST:     AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
genomic: AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATTgtatccttaa ... tattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
EST: gi|21995190|gb|BQ786718.1|BQ786718
EST:     AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT
genomic: AGAACTTCCACCTCATCGCCTCATGGAGATTCGCCGCTTCTTTGAAGATTgtatccttaa ... tattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtattttcataaaaaaaataaaaaattgagtgcatttcttaatatattgatcagACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAAT
 tttcttaat  putative branch site 
         ataaaaaaaataaaaa  TA-rich tract