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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgtctaacttttctttttgtttatccatttttctgctaatacttacatggtgttgattacattctgagttgacttgtttatgtagGTATCTGCAAAACAACCAGTTTACTGGCACCATTGATGTCCTTGCTAATCTGCCTCTTGATACTTT

Basic information

species Glycine max
transcript GLYMA07G05230.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05230.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os10g25090.1 (Oryza sativa), 3'ss of exon 7
gtaaatgtctaacttttctttttgtttatccatttttctgctaatacttacatggtgttgattacattctgagttgacttgtttatgtagGTATCTGCAAAACAACCAGTTTACTGGCACCATTGATGTCCTTGCTAATCTGCCTCTTGATACTTT
||||      ||||||   |  | |  ||  |||| |  | |    |||| |          || |  ||  |||    | | |    ||||||||||| |||||||| ||||||||  | ||  |||||||||||||||| || || |||| |||
gtaagaagg-aactttgaataatata-ataaatttataagtt--ctcttatac--------ctataacctatgtt---ctatcttaccagGTATCTGCAGAACAACCAATTTACTGGATCAATCAATGTCCTTGCTAATCTTCCCCTGGATAATTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193344980|gb|FK311606.1|FK311606
EST:     ACGGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGAACCAT                         GTATCTGACAAAACAACCAGTTTACTGGCACCATT
genomic: ACGGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGAACCATgtaaatgtct ... gtttatgtagGTATCTG-CAAAACAACCAGTTTACTGGCACCATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgctaatacttacatggtgttgattacattctgagttgacttgtttatgtagGTATCTGCAAAACAACCAGTTTACTGGCACCATTGATGTCCTTGCTAATCTGCCTCTTGATACTTT
                                          cttgttt  CT-rich tract
      taatactta  TA-rich tract