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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggttttagaatcttaattttctgtgtaacagggctctttatgatgtttttgacttaaaatttttcttgaatttttgtagGATGCACAAAGCTCTATAAATGATTTGACTG

Basic information

species Glycine max
transcript GLYMA07G04640.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193335573|gb|FK301827.1|FK301827
EST:     AGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAACCAACAG                         GATGCACAAAGCTCTATAAATGATTTG
genomic: AGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAACCAACAGgtggttttag ... atttttgtagGATGCACAAAGCTCTATAAATGATTTG
EST: gi|193662983|gb|FK600943.1|FK600943
EST:     AGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAACCAACAG                         GATGCACAAAGCTCTATAAATGATTTGACTG
genomic: AGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAACCAACAGgtggttttag ... atttttgtagGATGCACAAAGCTCTATAAATGATTTGACTG
EST: gi|7146716|gb|AW508638.1|AW508638
EST:     AGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAACCAACAT                         GATGCACAAAGCTCTATAAATGATTTGACTG
genomic: AGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAACCAACAGgtggttttag ... atttttgtagGATGCACAAAGCTCTATAAATGATTTGACTG
EST: gi|208037693|gb|GD832291.1|GD832291
EST:     AGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAACCAACAG                         GATGCACAAAGCTCTATAAATGATTTGACTG
genomic: AGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAACCAACAGgtggttttag ... atttttgtagGATGCACAAAGCTCTATAAATGATTTGACTG
EST: gi|208276269|gb|GE080331.1|GE080331
EST:     AGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAACCAACAG                         GATGCACAAAGCTCTATAAATGATTTGACTG
genomic: AGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAACCAACAGgtggttttag ... atttttgtagGATGCACAAAGCTCTATAAATGATTTGACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaacagggctctttatgatgtttttgacttaaaatttttcttgaatttttgtagGATGCACAAAGCTCTATAAATGATTTGACTG
                      ttttgac  putative branch site (score: 3)
                                              tttttgt  putative PPT
                     tttttgacttaaaatt  TA-rich tract