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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcagGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTACCTATAATCATTA

Basic information

species Glycine max
transcript GLYMA07G03890.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 3'ss of exon 7
gtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcagGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTACCTATAATCATTA
                 | |||||| || | || |||     |  |     |  | |   || | |   |     |  |  | ||   ||        |||| ||||| |||||||| ||||| || || ||||| ||||| || ||||| || ||||||||  | |||||||| || || |||||||| || |||||||||||||
---------------gttttttttttctatcca-cttttgagtgttccaagtatccacgattctgtgcagtcctaagatggtgtggtcatgg------tgaaccagGTCTGGGATTACCAAACGAAGAGCTGTGTTCAGACACTTGAAGGACATACACACAACATTTCTGCTGTTTGTTTCCATCCTGAGCTTCCTATAATCATTA

upper sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G443953_T01 (Zea mays), 3'ss of exon 8
gtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatg-ccgataaaacc-tttgaatcagGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTACCTATAATCATTA
                                        | | |  || |    |  |  | |       | |||   |||||| | |||        |||||| |||| |||||||||||||| || || ||||| || || || ||||| ||  |||| ||||| ||||||||||| || |||||||| || || ||||| || |
---------------------------------------gtatgacatgttcatttgcacatatgagcattttgga--cattatgactgattggttaacttgaattagGTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCACATAATGTCTCTGCTGTATGTTTCCATCCTGAGCTTCCAATAATAATGA

upper sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G000645_T03 (Zea mays), 3'ss of exon 7
gtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcagGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTACCTATAATCATTA
                 |    |||  |  ||| ||      |  ||  || |   ||  || |||   |     |  |  | |||   ||   |     ||  |||| |||||||| || || || || ||||| ||||| || ||||| || ||||| ||| | |||||||| || || |||||||| || |||||||||||||
----------------gtacaattttgtactcagctgtatgtt--ttgagtgtttgattgttctatccagtcctaaggtggtgtgctt-tatggc----aaaatagGTCTGGGATTACCAGACGAAGAGCTGTGTTCAGACACTTGAAGGGCATACACATAATATTTCTGCTGTTTGTTTCCATCCTGAGCTCCCTATAATCATTA

upper sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G095348_T02 (Zea mays), 3'ss of exon 6
gtttgttttctattttctgttttttcctcttcatcttccctctaatttg-gtttcctatatttgtatatgga-taggaattattatgccgataaaacctttg---aatcagGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTACCTATAATCATTA
                             | ||| ||    || |  ||  | | ||  |||| |   ||   || | | |||||||  | |      | ||   ||  |||| |||||||| || || ||||| ||||| ||||| || ||||| || ||||| ||  | |||||||| || || |||||||| || |||||||||||||
----------------------------gtacatttttgtactgaggtgtatgttctgaattttttgttgctctatgcagtattatgatggtgcgttttatggcaaagtagGTCTGGGATTACCAGACGAAAAGCTGTGTTCAGACACTTGAAGGGCATACACATAACATTTCTGCTGTTTGTTTCCATCCTGAGCTCCCTATAATCATTA

upper sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G15980.3 (Arabidopsis thaliana), 3'ss of exon 7
gtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcagGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTACCTATAATCATTA
        | |  ||   |||       |   ||||   || | |||      |  | | || | |||    ||  ||  || | |   |   || |||   |||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||| ||||| ||||| || ||||| || || || ||||| || |
-------gtatgcttctggttaagcttccaatatctgtgctttgattc---ccctgagaattatgtatttgcag--atcgtt-tactagtggtactttt---tcagGTATGGGACTATCAAACCAAAAGTTGTGTCCAGACGCTAGATGGGCACACACACAATGTTTCTGCCGTATGTTTCCATCCAGAGCTTCCAATAATAATCA

upper sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 11
---------------------------gtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcc---tatatttgtatatggataggaattattatgccg---ataaaaccttt---gaatcagGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTACCTATAATCATTA
                           |   ||| | |  |   | | | | | | |   | |  ||  |  | | ||||     ||  || ||  | || |     ||  |||   |   |||||    ||   ||| ||||| |||||||| ||||| || ||||| || |||||||| |||||||| ||||||||||| ||||| ||||  |||||||| || ||||||||||| ||||
gtctgtactgagctttcttgcttctttgcaagttgtttgctacatatgtgtgcttgtatgtatctccatttgtattgtttgtatataggttcgtgcagggttttctgtttgtatattgttcataaatttcttctggaagcagGTGTGGGATTACCAAACAAAGAGTTGCGTTCAGACTCTCGAAGGTCATACACACAATGTTTCTGCAGTATCTTTTCATCCAGAGCTACCTATAATTATTA

upper sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 3'ss of exon 7
gtttgttttctattttctgttttttcctct-tcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcagGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTACCTATAATCATTA
               | ||  |  |  ||  |  ||||     | ||    ||           ||| ||  |     |||||     | | ||     |||||||||| ||||| || ||||| ||||||||||| ||||| || || || |||||||||||||||||||| ||||| || ||||| || || || || || || |
--------------gtatgcctcctgttcaatggtcttttagttgatacatttctactggacattatgtgctttcaggttatttactagttgaatttcgtgaatcagGTCTGGGACTACCAAACAAAAAGTTGTGTACAGACCCTGGAGGGGCACACACACAATGTATCTGCAGTATGTTTCCATCCAGAGCTTCCAATTATAATCA

upper sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 7
gtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaat-cagGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTACCTATAATCATTA
               ||||   ||     || || |||   ||   ||   |   |||     |  || ||  | |||  | |||  || ||| |||   ||| ||||| ||||| |||||||||||||||||||||||||| || ||||| |||||||||||||| ||||| || ||||| ||||||||||| || ||||| || |
--------------gtctgccgttgataatt-attttcaagctgtgtttagtatttatgcggtttgatagaaggaaatgttcatg--gacaaatcctccaaatgcagGTGTGGGACTATCAAACCAAAAGTTGTGTCCAGACACTGGAAGGCCACACACACAATGTTTCTGCAGTCTGCTTCCATCCTGAACTTCCCATAATAATAA

upper sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 3'ss of exon 7
gtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctt--tgaatcagGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTACCTATAATCATTA
                  || |||  ||  |    |     |||| | | || | | ||| || || |  ||  || |  ||     ||| |||  ||  || | ||||| ||||| || ||||||||||||||||| ||||| |||||||| |||||||||||||| ||| | || || || ||||| || || ||||| ||  |||
------------------gtgtttatctgat-gcttattgactaaatagcttccatttatgtgcat-tccatttgattactttctgtgattaaattttggtggaacagGTGTGGGACTACCAAACCAAAAGTTGTGTTCAGACACTAGAAGGCCACACACACAATGTTTCTTCAGTCTGTTTCCATCCAGAGCTTCCTATTATTTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcagGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTACCTATAATCATTA
                                           ccttt  CT-rich tract
                   ataggaattattat  TA-rich tract