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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtatctatacatcttgaacgttgtgacaatgtatctttttttatttgagaggtgtgcttataaattaaacacgattaagcatgcacatactgctatatatggcttacgttaactattcaaatgattatctcttcaagcgaacataaagcatagttgtttaaagccaacctccaaaattcatttgtagGTGATGACGTAGTTCTCTACAAATACGGAGAGAAATCAGCTCAATCCTTAAGTTCAGCAGGGTTTCGATACATTACATTCAAATCCTATGATGG

Basic information

species Glycine max
transcript GLYMA07G03670.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192328050|gb|FK021796.1|FK021796
EST:     AGCAAGAAAGCGAGCTGCTTTGTTACCTGTTTTGCTGAGCCATGGAATCA                         GTGATGACGTAGTTCTCTACAAATACGGAGAGAAATCAGCTCAATCCTTAA
genomic: AGCAAGAAGGCGAGCTGCTTTGTTACCTGTTTTGCTGAGCCATGGAATCAgtacgtatct ... tcatttgtagGTGATGACGTAGTTCTCTACAAATACGGAGAGAAATCAGCTCAATCCTTAA
EST: gi|192328051|gb|FK021797.1|FK021797
EST:     AGCAAGAAGGCGAGCTGCTTTGTTACCTGTTTTGCTGAGCCATGGAATCA                         GTGATGACGTAGTTCTCTACAAATACGGAGAGAAATCAGCTCAATCCTTAA
genomic: AGCAAGAAGGCGAGCTGCTTTGTTACCTGTTTTGCTGAGCCATGGAATCAgtacgtatct ... tcatttgtagGTGATGACGTAGTTCTCTACAAATACGGAGAGAAATCAGCTCAATCCTTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaagcgaacataaagcatagttgtttaaagccaacctccaaaattcatttgtagGTGATGACGTAGTTCTCTACAAATACGGAGAGAAATCAGCTCAATCCTTAAGTTCAGCAGGGTTTCGATACATTACATTCAAATCCTATGATGG
                                            ttcattt  CT-rich tract
                                        aaaattcatttgta  TA-rich tract