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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaacacaatttaccagccatcttttgcatgatataatcatcacaaacttctgcattgattaatatgaactggatattgttaaattctaataattttatctgtatttgttgatttggtatgttggggattgacacaatcttgttgcagTTTTTATGAGTACTTGCTCAAAGTTTGGATACAAGGGAATAAGACTTCAGCCGTAAAACATTATAG

Basic information

species Glycine max
transcript GLYMA07G02290.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02290.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G51590.1 (Arabidopsis thaliana), 3'ss of exon 8
gtattaacacaatttaccagccatcttttgcatgatataatcatcacaaacttctgcattgattaatatgaactggatattgttaaattctaataattttatctgtatttgttgatttggtatgttggggattgacacaatcttgttgcagTTTTTATGAGTACTTGCTCAAAGTTTGGATACAAGGGAATAAGACTTCAGCCGTAAAACATTATAG
                                                |  |||| | |  |  ||| |  | |   | ||| |    |||  | |   |  || |  |   | | ||   ||  |     |||         | || ||| ||||||||||| ||||||||||||||| | |||||||| || || || ||||| ||||  |||||
----------------------------------------------gtagtttcttcctcca--aattttcattttgtgttggtcgggtcttgtgaccatgactttgctctctaacttttaataataat--ttgg--------ttttacagCTTTTATGAGTATTTGCTCAAAGTTTGGGTGCAAGGGAACAAAACATCTGCCGTGAAACCCTATAG

upper sequence: GLYMA07G02290.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv09s0054g00230.t01 (Vitis vinifera), 3'ss of exon 3
---------------gtattaacacaatttaccagccatcttttgcatgatataatcatcacaaacttct--gcattgattaatatgaactggatat-tgttaaattctaataattttatctgta--tttgttgatttggt--atgttggggattgac----acaatcttgttgcagTTTTTATGAGTACTTGCTCAAAGTTTGGATACAAGGGAATAAGACTTCAGCCGTAAAACATTATAG
                | |    || ||||    |  ||||||     ||| |     |||  |  |  |  | |||     |  | | ||   |   || |  |       || | | |   ||  ||||||  |||| |  |  |||| |||| ||    | ||  |  |||||| |||||||| || || |||||||||||||||||||| ||||| ||| | |  || || ||||||||
gtatgaccatttaatatttctgtacgatttgt--gatatctttcttgagatctgggtctcattatgtcataggaattctactactttatctatctccctgatggaggagctgaactatgtgcataattttgttagtttgattgacattggtgattaacttgaaaaacttgattgcagCTTTTATGAATATTTACTCAAAGTTTGGATACAAGGAAATAAAACTGCTGATGTGAAGCATTATAG

upper sequence: GLYMA07G02290.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv09s0054g00370.t01 (Vitis vinifera), 3'ss of exon 8
---------------gtattaacacaatttaccagccatcttttgcatgatataa---tcatcacaaacttctgcattgattaatatgaactggatattgttaaattctaataattttatctgta--tttgttgatttggt--atgttggggattgac----acaatcttgttgcagTTTTTATGAGTACTTGCTCAAAGTTTGGATACAAGGGAATAAGACTTCAGCCGTAAAACATTATAG
                | |    || ||||    |  ||||||     ||| |     |||| |     ||     |  | || | |           || |  |       || | |     ||  ||||||  |||| |  |  |||| |||| ||    | ||  |  |||||| |||||||| || || |||||||||||||||||||| ||||| ||| | || || || ||||||||
gtatgaccatttaatatttctgtacgatttgt--gatatctttcttgagatctgggtctcattatgtcattggaattctactactttatctatctccctgatggaggagctgaactatgagcataattttgttagtttgatcgacattggtgattaacttgaaaaacttgattgcagCTTTTATGAATATTTACTCAAAGTTTGGATACAAGGAAATAAAACTGCTGCTGTGAAGCATTATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatctgtatttgttgatttggtatgttggggattgacacaatcttgttgcagTTTTTATGAGTACTTGCTCAAAGTTTGGATACAAGGGAATAAGACTTCAGCCGTAAAACATTATAG
                                 gattgac  putative branch site (score: 3)
                                            tcttgtt  putative PPT
         tatttgtt  TA-rich tract