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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttaagttgcatgccaccttatggaattagttttattgctctagtagtgaactgtatacctacctattttatttttcatgtctaatagGATGCTGAAGAATGTTGGACACAACTTTTATACACACTCTCTCAGTCCCTCAGATCCCCTGGATCTAG

Basic information

species Glycine max
transcript GLYMA07G01480.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01480.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G51710.1 (Arabidopsis thaliana), 3'ss of exon 7
----gtttttaagttgcatgccaccttatggaattagttttattgctctagtagtgaactgtatacctacctattttatttttcatgtctaatagGATGCTGAAGAATGTTGGACACAACTTTTATACACACTCTCTCAGTCCCTCAGATCCCCTGGATCTAG--------------------------------
    ||| |||  |||||  | |   | | | ||||   || ||    |   |     | || |    ||  ||    ||||  |||||| | |||||||||||||||||||||||||||| |||||||| || ||||||||||| | | | ||    || ||                                
gtttgttctta--ttgcaaacta---tgttgcattaagctttttcagttttcacctttcagtgtgtgaactcat---gttttaaatgtctgacagGATGCTGAAGAATGTTGGACACAACTGTTATACACCCTTTCTCAGTCCCTAAAAGCACCAACTTCCAGCGAAGGTGCTGATGCTGTGAAAGCTCTATTTG

upper sequence: GLYMA07G01480.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G21280.1 (Arabidopsis thaliana), 3'ss of exon 7
gtttttaagttgcatgccacctta-tggaatta--gttttattgctctagtagtgaactgtatacctacctattttatttttcatgtctaatagGATGCTGAAGAATGTTGGACACAACTTTTATACACACTCTCTCAGTCCCTCAGATCCCCTGGATCTAG--------------------------------
|||| |   || | ||||| || | | | ||||  ||||||    || |||       | |  | | |   |     ||||  |||| ||| |||||||||||||||||||||||||| | || ||||| || || |||||||| | |   ||     ||||                                
gtttgttgctttc-tgccaactcagttgcattatggttttaaccttccagt------ttttgaatccagaaacc---ttttaaatgtgtaacagGATGCTGAAGAATGTTGGACACAAATGTTGTACACTCTTTCCCAGTCCCTAAAACTGCCATCGCCTAGTGAAGATCCTGATGCTGTGAAGGCTCTTTTTG

upper sequence: GLYMA07G01480.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv09s0002g02500.t01 (Vitis vinifera), 3'ss of exon 7
gtttttaagttgcatgccaccttatggaattagttttattgctctagtagtgaactgtatacctacctattttatttttcatgtctaatagGATGCTGAAGAATGTTGGACACAACTTTTATACACACTCTCTCAGTCCCTCAGATCCCCTGGATCTAG
||||| || |    || ||||   |   |  ||| | | |||| ||  |       ||| |   |   ||    |||   |  | | | |||||||||| |||||||||||||||||||||||||| || |||||||| || ||||| ||||| || ||
gttttcaattcttttgtcacccagtcatagcagtgtaactgctttaa-atctgttagtaaattaattcatacattttaaaacttatgacagGATGCTGAGGAATGTTGGACACAACTTTTATACACTCTTTCTCAGTCACTTAGATCACCTGGTTCCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11274686|gb|BF325023.1|BF325023
EST:     AAAAATATCCTCAATTTGGCCAGCTGCATAATGGAGTGTTCATGCAACAG                         GATGCTGAAGAATGTTGGACACAACTTTTATACACACTCTCTCAGTCCCTC
genomic: AAAAATATCCTCAATTTGGCCAGCTGCATAATGGAGTGTTCATGCAACAGgtttttaagt ... tgtctaatagGATGCTGAAGAATGTTGGACACAACTTTTATACACACTCTCTCAGTCCCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgctctagtagtgaactgtatacctacctattttatttttcatgtctaatagGATGCTGAAGAATGTTGGACACAACTTTTATACACACTCTCTCAGTCCCTCAGATCCCCTGGATCTAG
                                      tttttcat  CT-rich tract
                               tattttatttttcatg  TA-rich tract