1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtcaagagtatgagaatatctaacttgttatgttattggattgttgacaacaccatttcaagagagtaaatagtaacattcatgacactccaatggacaaacataaaagcttcaatttattttgttttttcatgactagccttgcctaattgtgtaaacttttgaatattaaacagGCACGACCACTGTTGGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGCTTGGTAAGCACTATTCAGAACATGAGGTCTATTGCATGCTGCATGCTG
species | Glycine max |
transcript | GLYMA07G01350.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGCAGTGCCTTACTGAGTGG GCACGACCACTGTTGGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGEST: gi|37993931|gb|CF805677.1|CF805677
genomic: CAGCAGTGCCTTACTGAGTGGgtaagtcaag ... tattaaacagGCACGACCACTGTTGGAAGAATATGCCATTGAGGAACTGATTGATCCAAGG
EST: AAGCTGTGGATCTCACTAGGCCAAAGGGGCAGCAGTGCCTTACTGAGTGG GCACGACCACTGTTGGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGEST: gi|37993936|gb|CF805682.1|CF805682
genomic: AAGCTGTGGATCTCACTAGGCCAAAGGGGCAGCAGTGCCTTACTGAGTGGgtaagtcaag ... tattaaacagGCACGACCACTGTTGGAAGAATATGCCATTGAGGAACTGATTGATCCAAGG
EST: AAGCTGTGGATCTCACTAGGCCAAAGGGGCAGCAGTGCCTTACTGAGTGG GCACGACCACTGTTGGAAGAATATGCCATTGAGGAACTGATTGATCCAAGG
genomic: AAGCTGTGGATCTCACTAGGCCAAAGGGGCAGCAGTGCCTTACTGAGTGGgtaagtcaag ... tattaaacagGCACGACCACTGTTGGAAGAATATGCCATTGAGGAACTGATTGATCCAAGG
ttgttttttcatgactagccttgcctaattgtgtaaacttttgaatattaaacagGCACGACCACTGTTGGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGCTTGGTAAGCACTATTCAGAACATGAGGTCTATTGCATGCTGCATGCTG
gcctaat putative branch site (score: 3)
taattgtgtaaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcaagagtatgagaatatctaacttgttatgttattggattgttgacaacaccatttcaagagagtaaatagtaacattcatgacactccaatggacaaacataaaagcttcaatttattttgttttttcatgactagccttgcctaattgtgtaaacttttgaatattaaacagGCACGACCACTGTTGGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGCTTGGTAAGCACTATTCAGAACATGAGGTCTATTGCATGCTGCATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG