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gtaattgcatgtcaattttctttcccttgtttctgtgagtggttgtgaataaatctgaaaccatttatctttccatatgtttctagGTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAGCAGCAGAACTCACTTCCAAAATATGCCAACCCTGTACTCTTGTCAGCTG
species | Glycine max |
transcript | GLYMA07G00820.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAG GTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAGEST: gi|192316976|gb|FK006147.1|FK006147
genomic: TGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... atgtttctagGTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAG
EST: TGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAG GTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAGEST: gi|24205508|gb|BU964761.1|BU964761
genomic: TGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... atgtttctagGTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAG
EST: TGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAG GTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAGEST: gi|192316977|gb|FK006148.1|FK006148
genomic: TGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... atgtttctagGTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAG
EST: TGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAG GTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAG
genomic: TGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... atgtttctagGTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAG
tctgtgagtggttgtgaataaatctgaaaccatttatctttccatatgtttctagGTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAGCAGCAGAACTCACTTCCAAAATATGCCAACCCTGTACTCTTGTCAGCTG
tgtttct CT-rich tract
atttatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgcatgtcaattttctttcccttgtttctgtgagtggttgtgaataaatctgaaaccatttatctttccatatgtttctagGTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAGCAGCAGAACTCACTTCCAAAATATGCCAACCCTGTACTCTTGTCAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG