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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaccaaccccacctattgggatgaggcttcttgttgtatctggcttcaatctctactttcatagtttttaagtgaccatttctctgtctgcatttccagTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAG

Basic information

species Glycine max
transcript GLYMA07G00490.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525212|gb|BU084023.1|BU084023
EST:     GTACTGGTGCTGGACTTGGATCGCTGGACTTCCTTAGAAATAACCCCCAG                         TTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAG
genomic: GTACTGGTGCTGGACTTGGATCGCTGGACTTCCTTAGAAATAACCCCCAGgtgagtttgc ... gcatttccagTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAG
EST: gi|13788099|gb|BG650691.1|BG650691
EST:     GTACTGGTGCTGGACTTGGATCGCTGGACTTCCTTAGAAATAACCCCCAG                         TTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAG
genomic: GTACTGGTGCTGGACTTGGATCGCTGGACTTCCTTAGAAATAACCCCCAGgtgagtttgc ... gcatttccagTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAG
EST: gi|17964519|gb|BM271253.1|BM271253
EST:     GTACTGGTGCTGGACTTGGATCGCTGGACTTCCTTAGAAATAACCCCCAG                         TTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAG
genomic: GTACTGGTGCTGGACTTGGATCGCTGGACTTCCTTAGAAATAACCCCCAGgtgagtttgc ... gcatttccagTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAG
EST: gi|207824976|gb|GD796296.1|GD796296
EST:     GTACTGGTGCTGGACTTGGATCGCTGGACTTCCTTAGAAATAACCCCCAG                         TTTCAAGCATTGCGTTCAAATGGTGCAAATACCAAATCCACAAATTCT
genomic: GTACTGGTGCTGGACTTGGATCGCTGGACTTCCTTAGAAATAACCCCCAGgtgagtttgc ... gcatttccagTTTCAAGCATTGCGTTCAA-TGGTGCAA-T-CCAA-TCCACAAATTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaatctctactttcatagtttttaagtgaccatttctctgtctgcatttccagTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAG
                                              catttcc  CT-rich tract
            tttcatagtttttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caaccaaccccacctattgggatgaggcttcttgttgtatctggcttcaatctctactttcatagtttttaagtgaccatttctctgtctgcatttccagTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAG

caaccaa
- - - -ccccacc
- - - - - - - - - - - - - gcttctt
- - - - - - - - - - - - - - - - - - - - -tggcttc