1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atggtgtcaagcaaagtgaatggcttgtcaggaattataattttagatcctaattaggttctttctaacacctggctgacatgctcttttatcatttcagGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTGGATAAGAATAAGAACACTGCTCTCCATTATGCAGCTGGTTATGGCAGAA
species | Glycine max |
transcript | GLYMA06G47830.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAG GTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTGEST: gi|151401062|gb|EV270876.1|EV270876
genomic: AAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAGgtatgctaat ... atcatttcagGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTG
EST: AAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAG GTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTGEST: gi|254335877|gb|GR847405.1|GR847405
genomic: AAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAGgtatgctaat ... atcatttcagGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTG
EST: AAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAG GTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTGEST: gi|254335741|gb|GR847269.1|GR847269
genomic: AAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAGgtatgctaat ... atcatttcagGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTG
EST: AAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAG GTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTGEST: gi|17152886|gb|BM142819.1|BM142819
genomic: AAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAGgtatgctaat ... atcatttcagGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTG
EST: AAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAG GTAAAATGTGCTCAAGTTCTACTCGAGGCTGGAGCAAAAGCGGATGCTEST: gi|192309989|gb|FK002513.1|FK002513
genomic: AAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAGgtatgctaat ... atcatttcagGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCT
EST: AAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAG GTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTGEST: gi|254335742|gb|GR847270.1|GR847270
genomic: AAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAGgtatgctaat ... atcatttcagGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTG
EST: AAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAG GTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTGEST: gi|209715175|gb|BW665652.1|BW665652
genomic: AAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAGgtatgctaat ... atcatttcagGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTG
EST: CTGTGGATATGGCGAG GTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTGEST: gi|21601758|gb|BQ612089.1|BQ612089
genomic: CTGTGGATATGGCGAGgtatgctaat ... atcatttcagGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTG
EST: AAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAG GTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTGEST: gi|6726608|gb|AW310962.1|AW310962
genomic: AAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAGgtatgctaat ... atcatttcagGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTG
EST: AGATTCAGAGGGAAGAACTGC-TTGCATTTTTGCCTGTGGATATGGCGAG GTAANATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTG
genomic: AGATTCAGAGGGAAGAACTGCTTTGCA-TTTTGCCTGTGGATATGGCGAGgtatgctaat ... atcatttcagGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTG
gatcctaattaggttctttctaacacctggctgacatgctcttttatcatttcagGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTGGATAAGAATAAGAACACTGCTCTCCATTATGCAGCTGGTTATGGCAGAA
ctcttttatcatttc CT-rich tract
ttttatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggtgtcaagcaaagtgaatggcttgtcaggaattataattttagatcctaattaggttctttctaacacctggctgacatgctcttttatcatttcagGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTGGATAAGAATAAGAACACTGCTCTCCATTATGCAGCTGGTTATGGCAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - tcaagca
- - - - - - - -gtgaatg
- - - - - - - - - - - gcttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgctc