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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaatagttctaaagtttctgataatctcttactttattatgtatcaaggcatgagttttattgtaaacctcctgacactgtcttcgattcctaagtgtaaaaaaaagcatgagttttatgtttctatagtaagtaatcatgatgttgttttagtatgtactttttgtcttagtgtcatattctttcggtttcagCAACACTGGGACAAACTCTAGTTAGGCATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAA

Basic information

species Glycine max
transcript GLYMA06G46230.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G46230.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os02g06840.2 (Oryza sativa), 3'ss of exon 8
gtattaatagttctaaagtttctgataatctcttactttattatgtatcaaggcatgagttttattgtaaacctcctgacactgtcttcgattcctaagtgtaaaaaaaagcatgagttttatgtttctatagtaagtaatcatgatgttgttttagtatgtactttttgtcttagtgtcatattctttcggtttcagCAACACTGGGACAAACTCTAGTTAGGCATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAA
                                                                                              |||     |  ||     ||  | || || |   | ||| |||    ||| |      |  |  ||  | | ||| |   | ||   | ||  ||   || |||||||||| ||||| | | ||  ||  |||  ||  || ||  |  |||| |||||||||||||||||||| ||||||||| |  | ||
--------------------------------------------------------------------------------------------agctagtctcatcaatgcatatttgattcat-tgcatgtagaaaggg--catcactgctatagacaattgattctttatgacattggtgttttgctt---ttgcagCAACACTTGGACAGATTTTATCTAATCATGCATTGAAGCCCAGAGTATATATTGGATGCATGAAATCTGGACCTGTCCTAACTGAGAA

upper sequence: GLYMA06G46230.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G007185_T01 (Zea mays), 3'ss of exon 7
gtattaatagttctaaagtttctgataatctcttactttattatgtatcaaggcatgagttttattgtaaacctcctgacactgtcttcgattcctaagtgtaaaaaaaagcatgagttttatgtttctatagtaagtaatcatgatgttgttttagtatgtactttttgtcttagtgtcatattctttcggtttcagCAACACTGGGACAAACTCTAGTTAGGCATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAA
                                                                                            |  | | | | |  | |    |||   | |  ||   ||| | ||||||  |  | || | ||       | | | | ||| |   | | | | || || || |||||||||| ||| | |   ||   |  |||   ||||| ||  || ||||||||||||||||||| ||||| |||||||| ||  | ||
-------------------------------------------------------------------------------------------gtgttgatttttagcatat---tgaacctgacatt---atattcagtaattgtctttttatgttcagcaacattatatttct-aacatgacaattttacgtttgcagCAACACTTGGAAATATCTTATCCAAACATATTTCAAAGCCCAGGGTATACATTGGATGCATGAAGTCTGGCCCTGTCCTCTCTGACAA

upper sequence: GLYMA06G46230.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G132866_T02 (Zea mays), 3'ss of exon 6
gtattaatagttctaaagtttctgataatctcttactttattatgtatcaaggcatgagttttattgtaaacctcctgacactgtcttcgattcctaagtgtaaaaaaaagcatgagttttatgtttctatagtaagtaat-catgatgttgttttagtatgtactttttgtcttagtgtcatattctttcggtttcagCAACACTGGGACAAACTCTAGTTAGGCATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAA
                                                                                           ||   ||     ||  | |   |||  | |   | |  |||  || ||    |||||    | |    | | |  |        |  | || | |    |  || ||||||| || ||||| | |||    |  |||  ||  || ||  |  | ||||| ||||||||||||||||| |||||| ||||| ||||
-------------------------------------------------------------------------------------------ttaaaaaactagaagtacaagctgatgtgtgaatctgcataaaaaatagcatatgataagctctggcaaagcaact--------aacgccaaagttcggcatttgcagCAACGCTCGGACAGATTCTGTCGAAACATGCATTGAAGCCGAGAGTGTACATCGGATGCATGAAATCTGGACCTGTCTTATCCGAAAA

upper sequence: GLYMA06G46230.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G05170.2 (Arabidopsis thaliana), 3'ss of exon 7
gtattaatagttctaaagtttctgataatctcttactttattatgtatcaaggcatgagttttattgtaaacctcctgacactgtcttcgattcctaagtgtaaaaaaaagcatgagttttatgtttctatagtaagtaatcatgatgttgttttagtatgtactttttgtcttagtgtcatattctttcggtttcagCAACACTGGGACAAACTCTAGTTAGGCATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAA
                                                                                          | | ||||    ||  ||  | ||  |||||     | ||| || | |   ||| |  || |  | | |  ||||  | |  | | |||   | |     |  | ||||||| || ||  ||||||| ||||| || ||   |||||||||| | || ||||| |||||||||||||| |||||||| || |||||
---------------------------------------------------------------------------------------gtaagttctaaaatcaacgaattgaattggtttt----ctttat-gtcattttgcat-accttatactggca-atactaatgggttcaatgtttcactgaaatgtctgcagCAACTCTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgttgttttagtatgtactttttgtcttagtgtcatattctttcggtttcagCAACACTGGGACAAACTCTAGTTAGGCATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAA
                                      tattctttc  CT-rich tract
        ttttagtat  TA-rich tract