1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tattgagaaggaatctctgtgtcacctttcacgagttttgaaatagttccaaacttacacatttgaaaagcaaaagcatgacaaagtcttactaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAAAAAGGAAAATGGCATTATCTTCAAAGAAACTTGAGAAGAATGGCCTTGG
species | Glycine max |
transcript | GLYMA06G43930.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATG CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCEST: gi|208152125|gb|GD944386.1|GD944386
genomic: TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATGgtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGC
EST: TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATG CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAAEST: gi|51335751|gb|CO979617.1|CO979617
genomic: TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATGgtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAA
EST: CGATGATGAAAATG CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAAEST: gi|193452111|gb|FK421037.1|FK421037
genomic: CGATGATGAAAATGgtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAA
EST: AAGTCTCAGGGTGATTTTGACGATGATGAAAATG CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCEST: gi|6726040|gb|AW310439.1|AW310439
genomic: AAGTCTCAGGGTGATTTTGACGATGATGAAAATGgtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGC
EST: TGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATG CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAAEST: gi|193324432|gb|FK292670.1|FK292670
genomic: TGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATGgtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAA
EST: TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATG CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAAEST: gi|193680659|gb|FK621149.1|FK621149
genomic: TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATGgtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAA
EST: TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATG CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGEST: gi|193718636|gb|FK652606.1|FK652606
genomic: TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATGgtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAG
EST: TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATG CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAAEST: gi|208227168|gb|GE024185.1|GE024185
genomic: TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATGgtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAA
EST: GTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGTACGATGATGAAAATAG CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCA
genomic: GTTTTGCAACTCTCAAGTCTCAGGGTGATTTTG-ACGATGATGAAAAT-Ggtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCA
gttccaaacttacacatttgaaaagcaaaagcatgacaaagtcttactaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAAAAAGGAAAATGGCATTATCTTCAAAGAAACTTGAGAAGAATGGCCTTGG
tactaat putative branch site (score: 1)
tcttact CT-rich tract
atttgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgagaaggaatctctgtgtcacctttcacgagttttgaaatagttccaaacttacacatttgaaaagcaaaagcatgacaaagtcttactaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAAAAAGGAAAATGGCATTATCTTCAAAGAAACTTGAGAAGAATGGCCTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - -tgtcacc
- - - - - - - - - - - - - - - - - - - - - - - - ccaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgac