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...tgatttaataaaaagtgactattctactttaaccctttagtggaaataaatggaccaaaacagtagctttttatgttcatttctttacttttttctacagATATGCAATGAGTTTTGCCGCAAATGAGCTCAAAATTATGTATGTCAACAGAACGCCCAAGTCAAACAAAGCAATTCATATTGTTTCTAGTGCTTACAAG
species | Glycine max |
transcript | GLYMA06G43840.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTGATTACCCTAGTCATCAACGGCGTCTGTTACCTTTACTTGCAAAGGT ATATGCAATGAGTTTTGCCGCAAATGAGCTCAAAATTATGTATGTCAACAGEST: gi|12774606|gb|BG239533.1|BG239533
genomic: CTTGATTACCCTAGTCATCAACGGCGTCTGTTACCTTTACTTGCAAAGGTgtaagtcctc ... ttttctacagATATGCAATGAGTTTTGCCGCAAATGAGCTCAAAATTATGTATGTCAACAG
EST: CTTGATTACCCTAGTCATCAACGGCGTCTGTTACCTTTACTTGCAAAGGT ATATGCAATGAGTTTTGCCGCAAATGAGCTCAAAATTATGTATGTCAACAGEST: gi|7691519|gb|AW759645.1|AW759645
genomic: CTTGATTACCCTAGTCATCAACGGCGTCTGTTACCTTTACTTGCAAAGGTgtaagtcctc ... ttttctacagATATGCAATGAGTTTTGCCGCAAATGAGCTCAAAATTATGTATGTCAACAG
EST: CTTGATTACCCTAGTCATCAACGGCGTCTGTTACCTTTACTTGCAAAGGT ATATGCAATGAGTTTTGCCGCAAATGAGCTCANAATTATGTATGTCAACAG
genomic: CTTGATTACCCTAGTCATCAACGGCGTCTGTTACCTTTACTTGCAAAGGTgtaagtcctc ... ttttctacagATATGCAATGAGTTTTGCCGCAAATGAGCTCAAAATTATGTATGTCAACAG
ataaatggaccaaaacagtagctttttatgttcatttctttacttttttctacagATATGCAATGAGTTTTGCCGCAAATGAGCTCAAAATTATGTATGTCAACAGAACGCCCAAGTCAAACAAAGCAATTCATATTGTTTCTAGTGCTTACAAG
ctttttatgttcattt CT-rich tract
tttttatgttcatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatttaataaaaagtgactattctactttaaccctttagtggaaataaatggaccaaaacagtagctttttatgttcatttctttacttttttctacagATATGCAATGAGTTTTGCCGCAAATGAGCTCAAAATTATGTATGTCAACAGAACGCCCAAGTCAAACAAAGCAATTCATATTGTTTCTAGTGCTTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - aataaaa
- - - - - - - gtgacta
- - - - - - - - - - - - - - - - cccttta
- - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaaac