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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattaaatttatattcaatttaatttaaacttaatgtcttgtattttgagaacatttctagcatgtaattgatgactggggtatgtttttatgtcccagATTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCACTAGCTGGCCGTGATGGCACTCAT

Basic information

species Glycine max
transcript GLYMA06G43820.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G43820.2 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os01g54910.1 (Oryza sativa), 3'ss of exon 7
ttattaaatttatattcaatttaatttaaacttaatgtcttgtatt-ttgagaacatttctagcat---gtaattgatgactggggtatgtttttatgtcccagATTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCACTAGCTGGCCGTGATGGCACTCAT
                            |  ||  |   | ||  |  |||     ||||||   |    || |   ||        ||| || ||      ||||| || ||||  | || ||| |||| ||||||||||| ||||| || |||||||||||||| || || || |||||  ||||||| ||||||||||||
--------------------------gtaggttgctaattcgtgctgctgaacgtgtttctattgtcagatattccttgtactaataatggttgtacaatatagATTTTGACTGCCCTTCCTACAATTGAGTTGGACCCTCCCACAATATCTATGACTTTTGGTGTGAATGATTCACCACTGTCTGGCCGCGATGGCACTCAT

upper sequence: GLYMA06G43820.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 3'ss of exon 7
-ttattaaatttatattcaatttaatttaaacttaatgtcttgtattttgagaacatttctagcatgtaattgatgactggggtat---gtttttatgtcccagATTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCACTAGCTGGCCGTGATGGCACTCAT
 || ||  |   || ||      ||| ||   |||     ||  | ||| || |  ||||| | || |  ||  | ||||     |    || |  | | |||| ||||| ||||  ||||||| ||||| ||||| || || || ||||||||||| ||| |||| || ||||| ||||| ||||| ||||||||||| |||
tttctttgaaagatttttgg--aaatctatttttagctatttaaacttt-aggatgtttcttgtat-tgctttcttactgaatcttcaaattgtggtctgccagGTTATGACTGCACTGCCCACTGTTGAGTTGGATCCCCCAACCATTTCCATGACCTTTAGTGTCAATGACTCTCCACTGGCTGGTCGTGATGGCACCCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgagaacatttctagcatgtaattgatgactggggtatgtttttatgtcccagATTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCACTAGCTGGCCGTGATGGCACTCAT
                      aattgat  putative branch site (score: 4)
                                       tgttttt  putative PPT
                                     tatgtttttat  TA-rich tract