1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ataccttatgcatggcatgacaatgagactatatgttttcagaataatcatgatatagtaattatattaaaactctataacctccaattttttcttgtagTTCCTGGAGCCTCTTGAATTATGTTATAGATCGCTGTGTGCATGTGGTGACCAACCAATAGCTGATGGAAGCCTTCTTGATTTCTTGCGCCAAGTTTCCA
species | Glycine max |
transcript | GLYMA06G43050.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGGAAGCTCTGAAATCCCTGAGGAGACTACCTTCACAAATGTTGAACAG TTCCTGGAGCCTCTTGAATTATGTTATAGATCGCTGTGTGCATGTGGTGACEST: gi|7685334|gb|AW755982.1|AW755982
genomic: ATGGAAGCTCTGAAATCCCTGAGGAGACTACCTTCACAAATGTTGAACAGgtattatact ... tttcttgtagTTCCTGGAGCCTCTTGAATTATGTTATAGATCGCTGTGTGCATGTGGTGAC
EST: ATGGAAGCTCTGAAATCCCTGAGGAGACTACCTTCACAAATGTTGAACAG TTCCTGGAGCCTCTTGAATTATGTTATAGATCGCTGTGTGCATGTGGTGACEST: gi|7591303|gb|AW707039.1|AW707039
genomic: ATGGAAGCTCTGAAATCCCTGAGGAGACTACCTTCACAAATGTTGAACAGgtattatact ... tttcttgtagTTCCTGGAGCCTCTTGAATTATGTTATAGATCGCTGTGTGCATGTGGTGAC
EST: ATGGAAGCTCTGAAATCCCTGAGGAGACTACCTTCACAAATGTTGAACAG TTCCTGGAGCCTCTTGAATTATGTTATAGATCGCTGTGTGCATGTGGTGACEST: gi|10845304|gb|BF068451.1|BF068451
genomic: ATGGAAGCTCTGAAATCCCTGAGGAGACTACCTTCACAAATGTTGAACAGgtattatact ... tttcttgtagTTCCTGGAGCCTCTTGAATTATGTTATAGATCGCTGTGTGCATGTGGTGAC
EST: ATGGAAGCTCTGAAATCCCTGAGGAGACTACCTTCACAAATGTTGAACAG TTCCTGGAGCCTCTTGAATTATGTTATAGATCGCTGTGTGCATGTGGTGAC
genomic: ATGGAAGCTCTGAAATCCCTGAGGAGACTACCTTCACAAATGTTGAACAGgtattatact ... tttcttgtagTTCCTGGAGCCTCTTGAATTATGTTATAGATCGCTGTGTGCATGTGGTGAC
aatcatgatatagtaattatattaaaactctataacctccaattttttcttgtagTTCCTGGAGCCTCTTGAATTATGTTATAGATCGCTGTGTGCATGTGGTGACCAACCAATAGCTGATGGAAGCCTTCTTGATTTCTTGCGCCAAGTTTCCA
ctataac putative branch site (score: 3)
cctccaattttttctt CT-rich tract
tgatatagtaattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataccttatgcatggcatgacaatgagactatatgttttcagaataatcatgatatagtaattatattaaaactctataacctccaattttttcttgtagTTCCTGGAGCCTCTTGAATTATGTTATAGATCGCTGTGTGCATGTGGTGACCAACCAATAGCTGATGGAAGCCTTCTTGATTTCTTGCGCCAAGTTTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - tatgcat
- - - - - - - gcatgac
- - - - - - - - - - - - - - - - - - - - - - - - catgata