Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacatatttaattaatgataatattaattagtgcacttcatttcgactggatatgctaattgtttgataactacagACCTTTGTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAAAACTCAGAAGGATATAATGTGAAG

Basic information

species Glycine max
transcript GLYMA06G36130.4
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G36130.3 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os07g32400.2 (Oryza sativa), 3'ss of exon 7
-------gtaaacatatttaattaatgataata--ttaattagtgcacttcatttcgactggata----tgctaattg--------tttgataactacagACCTTTGTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAAAACTCAGAAGGATATAATGTGAAG
       |  |  ||  ||   || || |  ||  | ||  |     |||   ||      | ||    ||||||| |        |||||    |  |||| ||||| ||||| || ||||||||||| |||||||||||||||||||| || || || ||||  |||
ctgttctgctagtatcattcggtagtgtttttagctcaaggacaaacctttgcttttggaaggtaatattgctaatggcttttaattttgaattgtgtagACATTTGTTGGAACTCCCTTTTGGATGGCACCTGAGGTTATTCAAAACTCTGACGGGTACAATGAAAAG

upper sequence: GLYMA06G36130.3 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G027756_T02 (Zea mays), 3'ss of exon 4
--------------gtaaacatatttaattaatgataatattaatta----gtgcacttcatttcgactggat--atgctaattgtttgataac-tacagACCTTTGTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAAAACTCAGAAGGATATAATGTGAAG
                ||| ||  |   | ||  || | ||| ||||    |||  | |   | |  ||||     |||||||  ||| | |   | ||||| ||||| ||||| || ||||||||||| ||||||||||||||||| || ||||| || |||| ||||
tttaaattttatggcaaaatattctctttgaaaaattacattgattaaagggtgagcatttgtactgctggtctgctgctaatgatttcaaactgttcagACATTTGTTGGAACTCCCTTTTGGATGGCACCTGAGGTTATTCAAAATTCTGAAGGGTACAATGAGAAG

upper sequence: GLYMA06G36130.3 (Glycine max), 3'ss of exon 7
lower sequence: AT1G53165.2 (Arabidopsis thaliana), 3'ss of exon 8
--------------------gtaaacatatttaattaatgataatatta-attagtgcacttcatttcgactggatatgctaattgtttgataactacagACCTTTGTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAAAACTCAGAAGGATATAATGTGAAG
                     |    |  | |      ||||  | |    ||| |  ||  | ||  ||||| || |||||||  | | |     |||||| |||||||||||||||||||||||||| || || || ||||| ||||| ||||| ||||||| ||||
aacttgttaagaattttattatgttgagttctcgcctgtgatggtttggtgttattatacaactttcggactgtatttgctaatgatataaagttgacagACATTTGTAGGAACACCATTTTGGATGGCACCAGAAGTGATTCAGAACTCCGAAGGTTATAATGAGAAG

upper sequence: GLYMA06G36130.3 (Glycine max), 3'ss of exon 7
lower sequence: AT3G15220.1 (Arabidopsis thaliana), 3'ss of exon 8
------------------gtaaacatatttaattaatgataatat-taattagtgcac-ttcatttcgactggatatgctaat-tgtttgataactacagACCTTTGTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAAAACTCAGAAGGATATAATGTGAAG
                    |    || ||   |  ||||  | |  ||||    | | ||||| | |  ||  |  ||| || ||||  | ||  |||||| ||||||||||| |||||||||||||| || || |||||||| ||||||||||| ||||||| ||||
atcaatttgaacaacatctcatctttacttctctgctgatggtttgcaattttcactcattcatctgggttgcgtgcgctgatatgttaaagaatgacagACTTTTGTAGGAACCCCATTTTGGATGGCACCAGAAGTTATTCAGAACTCAGAAGGGTATAATGAGAAG

upper sequence: GLYMA06G36130.3 (Glycine max), 3'ss of exon 7
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 8
-----------gtaaacatatttaattaatgataatattaattagtgc--acttcatttcg-actggatat------gctaat-tgtttgataactacagACCTTTGTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAAAACTCAGAAGGATATAATGTGAAG
            | ||||| | |||    |||    ||  | |    |  ||||||||||    |  ||||       ||||| ||||| | ||  |||||| ||||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||||| ||||
gctaggaaccaatgaacatgtctaaaagttgaatggatcgaatgcctcttacttcatttcatgatatatatttttacactaatgtgtttaacaatgacagACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254339249|gb|GR847966.1|GR847966
EST:     CAGATTTTGGTGTTTCTGCACAGTTAACAAGAACTATATCA-GGAGAA-G                         ACCTTTTGTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAA
genomic: CAGATTTTGGTGTTTCTGCACAGTTAACAAGAACTATATCAAGGAGAAAGgtaaacatat ... ataactacagACCTTT-GTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattaattagtgcacttcatttcgactggatatgctaattgtttgataactacagACCTTTGTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAAAACTCAGAAGGATATAATGTGAAG
                                           tgataac  putative branch site (score: 2)
                                   taattgtttgataa  TA-rich tract