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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttagatgacttttctttatccttagtaattcctaaagttggttttgtatttgttggcaagattcatatttttttatatggttttgcatcttgttataacgctacttcataacttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGTTTTAAAAACTATGATATTGGGAAACTACCCTGAATTGAGAATTTTTGTC

Basic information

species Glycine max
transcript GLYMA06G17930.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336730|gb|GR842909.1|GR842909
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|12773256|gb|BG238183.1|BG238183
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|6072821|gb|AW102208.1|AW102208
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATANAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|254335479|gb|GR847007.1|GR847007
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|254329001|gb|GR833373.1|GR833373
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|6070838|gb|AW100225.1|AW100225
EST:     ATGAATATGCCCAGAGTTGTGACATTGTGGCCTTCAAATAAAAT-TATAA                         ---CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: ATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAA-TAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|8285537|gb|BE023096.1|BE023096
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|254343730|gb|GR857486.1|GR857486
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCA-TAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|57575395|gb|CX548370.1|CX548370
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|10234447|gb|BE803335.1|BE803335
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATA--T--                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|57575104|gb|CX548079.1|CX548079
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|254346824|gb|GR856546.1|GR856546
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|254329000|gb|GR833372.1|GR833372
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|209721178|gb|BW659190.1|BW659190
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATA--T--                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|254343731|gb|GR857487.1|GR857487
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|21887772|gb|BQ740985.1|BQ740985
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATA--T--                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|26269428|gb|CA820491.1|CA820491
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|213596126|gb|DB977488.1|DB977488
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|151403128|gb|EV272938.1|EV272938
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAA-TAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCA-CGGGAG
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAG
EST: gi|151400262|gb|EV270076.1|EV270076
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATA--T--                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|209728947|gb|BW655001.1|BW655001
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|16342208|gb|BI967803.1|BI967803
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|8403148|gb|BE058782.1|BE058782
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATA--T--                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|14990691|gb|BI316364.1|BI316364
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|23734643|gb|BU765560.1|BU765560
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|192296995|gb|FG990296.1|FG990296
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCA
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCA
EST: gi|6726934|gb|AW311214.1|AW311214
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttttatatggttttgcatcttgttataacgctacttcataacttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGTTTTAAAAACTATGATATTGGGAAACTACCCTGAATTGAGAATTTTTGTC
                                       tcataac  putative branch site (score: 2)
                       ttgttataa  TA-rich tract