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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttcaaatcctgcctcacaggaaaacattattatataactcaataatataatataaaatatggttcatgagtctgattattctttattttaataaaactttttcagGATTTAGCTTTTACACTAGAAGAATGAGCCAAAAAGAAATTAGGCATTAGGAGGAAAAACCAAAGCTACGCTTGGTATCGGTATATAAGTACATCATCAT

Basic information

species Glycine max
transcript GLYMA06G17420.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27424795|gb|CA936315.1|CA936315
EST:     TTAATATAAAATTCACAGAGCTAGCTGCCCTACAAAACTTCGAACATGTT                         GATTTAGCTTTTACACTAGAAGAATGATCCAAAAAGAAATTACGCATTAGG
genomic: TTAATATAAAATTCACAGAGCTAGCTGCCCTACAAAACTTCGAACATGTTgtaagttttc ... actttttcagGATTTAGCTTTTACACTAGAAGAATGAGCCAAAAAGAAATTAGGCATTAGG
EST: gi|27424970|gb|CA936490.1|CA936490
EST:     TTAATATAAAATTCACAGAGCTAGCTGCCCTACAAAACTTCGAACATGTT                         GATTTAGCTTTTACACTAGAAGAATGATCCAAAAAGAAATTAGGCATTAGG
genomic: TTAATATAAAATTCACAGAGCTAGCTGCCCTACAAAACTTCGAACATGTTgtaagttttc ... actttttcagGATTTAGCTTTTACACTAGAAGAATGAGCCAAAAAGAAATTAGGCATTAGG
EST: gi|27424848|gb|CA936368.1|CA936368
EST:     TTAATATAAAATTCACAGAGCTAGCTGCCCTACAAAACTTCGAACATGTT                         GATTTAGCTTTTACACTAGAAGAATGATCCAAAAAGAAATTAGGCATTAGG
genomic: TTAATATAAAATTCACAGAGCTAGCTGCCCTACAAAACTTCGAACATGTTgtaagttttc ... actttttcagGATTTAGCTTTTACACTAGAAGAATGAGCCAAAAAGAAATTAGGCATTAGG
EST: gi|7283681|gb|AW596285.1|AW596285
EST:     TTAATATAAAATTCACAGAGCTAGCTGCCCTACAAAACTTCGAACATGTT                         GATTTAGCTTTTACACTAGAAGAATGAGCCAAAAAGAAATTAGGCATTAGG
genomic: TTAATATAAAATTCACAGAGCTAGCTGCCCTACAAAACTTCGAACATGTTgtaagttttc ... actttttcagGATTTAGCTTTTACACTAGAAGAATGAGCCAAAAAGAAATTAGGCATTAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataaaatatggttcatgagtctgattattctttattttaataaaactttttcagGATTTAGCTTTTACACTAGAAGAATGAGCCAAAAAGAAATTAGGCATTAGGAGGAAAAACCAAAGCTACGCTTGGTATCGGTATATAAGTACATCATCAT
                                   ttttaat  putative branch site (score: 3)
                                              ctttttc  putative PPT
                  agtctgattattcttt  TA-rich tract