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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatttttgtctgctttcacttgtctttttttcctcgtaaagctaagatgttcttggtctcactagacataatttacagcagGAGTGTCATCTGGATTTATTGCATCTGGTGTCAGCTTGGAAAATGGATATAATCAGGGATTTCGTTCTGAAACACAGCTACCTGCTTTTATGGATAACTC

Basic information

species Glycine max
transcript GLYMA06G17250.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10236320|gb|BE805208.1|BE805208
EST:     TGATTTTGGTCATAGTTTGAGTGACAACATATCCTTAAGGCATAATAAAG                         C
genomic: TGATTTTGGTCATAGTTTGAGTGACAACATATCCTTAAGGCATAATAAAGgtatgatttt ... tttacagcag-
EST: gi|10236320|gb|BE805208.1|BE805208
EST:     TGATTTTGGTCATAGTTTGAGTGACAACATATCCTTAAGGCATAATAAAG                         C
genomic: TGATTTTGGTCATAGTTTGAGTGACAACATATCCTTAAGGCATAATAAAGgtatgatttt ... tttacagcag-
EST: gi|10236320|gb|BE805208.1|BE805208
EST:     TGATTTTGGTCATAGTTTGAGTGACAACATATCCTTAAGGCATAATAAAG                         C
genomic: TGATTTTGGTCATAGTTTGAGTGACAACATATCCTTAAGGCATAATAAAGgtatgatttt ... tttacagcag-
EST: gi|10238779|gb|BE807667.1|BE807667
EST:     TGATTTTGGTCATAGTTTGAGTGACAACATATCCTTAAGGCATAATAAAGCAG                       
genomic: TGATTTTGGTCATAGTTTGAGTGACAACATATCCTTAAGGCATAAT-AA--AGgtatgatttt ... tttacagc


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcctcgtaaagctaagatgttcttggtctcactagacataatttacagcagGAGTGTCATCTGGATTTATTGCATCTGGTGTCAGCTTGGAAAATGGATATAATCAGGGATTTCGTTCTGAAACACAGCTACCTGCTTTTATGGATAACTC
                             gtctcac  putative branch site (score: 3)
                                       acataattta  TA-rich tract