Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttgttttagaaaattgtctcaattctacataattatcgattcatagtatattgaacttatttgatggaacatgcttgctgagtacttgggtattatgctgaactatttgattggctaactatttgattttgataattatatcagAGGGTATTCTTGGAAGGGAATCCTTACCTCCTGGCAATTACCATGGTTGTTTCTCTTCTCCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATG

Basic information

species Glycine max
transcript GLYMA06G16940.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16940.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0130g00170.t01 (Vitis vinifera), 3'ss of exon 7
gtttgttgttttagaaaattgtctcaattctacataattatcgattcatagtatattgaacttatttgatggaacatgcttgctgagtacttgggtat-tatgctgaactatttgattggctaactatttgattttgataattatatcagAGGGTATTCTTGGAAGGGAATCCTTACCTCCTGGCAATTACCATGGTTGTTTCTCTTCTCCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATG
                                           | |  || |   ||   ||| | | ||  |  || |      | || | || ||| |||||  | || |   ||   || | ||| | ||  |  || || ||||||||||||||||||||||| |||||||| |||||||   |||| ||||| || ||   ||| ||||| || ||||| |||||||| ||||||||||
------------------------------------------cacttttatttctttttgcttctgtcatctattatac-----aaata-tcggatatgtatgcatatctttcaaatc--ctgattatattatcattctatttctatcagAGGGTATTCTTGGAAGGAAATCCTTATCTCCTGGTGGTTACAATGGTGGTCTCATGTCTTCATTCGGTGTTTGATTTCTTGGCATTCAAGAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24135377|gb|BU925878.1|BU925878
EST:     TTCACCGTAGTTATGGAAGCATGCTTGAAGGCGAGGCTGATGAACTCAAG                         AGGGTATTCTTGGAAGGGAATCCTTACCTCCTGGTAATTACCATGGTTGTT
genomic: TTCACCGTAGTTATGGAAGCATGCTTGAAGGCGAGGCTGATGAACTCAAGgtttgttgtt ... attatatcagAGGGTATTCTTGGAAGGGAATCCTTACCTCCTGGCAATTACCATGGTTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattatgctgaactatttgattggctaactatttgattttgataattatatcagAGGGTATTCTTGGAAGGGAATCCTTACCTCCTGGCAATTACCATGGTTGTTTCTCTTCTCCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATG
                          taactatttgattttg  TA-rich tract