Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatgcagaaaactttttgttgacctttgtgtaattaattaatgtcacatgctgatgaatgaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCATCTTATGGCTGCAAAATCACCGTTGTTCCATGTACATGGCCAGCATCAG

Basic information

species Glycine max
transcript GLYMA06G15510.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15510.4 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0044g00550.t01 (Vitis vinifera), 3'ss of exon 7
----------------------gtaag-taatgc-agaaaactttttg----ttgaccttt-gtgtaattaattaat-gtcacatgctgatgaatgaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCATCTTATGGCTGCAAAATCACCGTTGTTCCATGTACATGGCCAGCATCAG
                       || | |||| | |||||| |  ||     ||||  ||  || |   |||||  | ||   ||         |     || ||||  | || ||||||||||| ||||||||||||||| | || ||  | ||||| |||||||| |||||||| ||||| ||||  ||||||||||| ||||
gttagtattactcgttcaaagtttatgctaataccagaaaattgcttacaatttgaatttcagtctcgataattctttgttctatctatccttgtttggatgaagGTTATCGCATATGATTTTGGGATCAAGCATAATATATTAAGACGTTTGGCATCCTATGGCTGTAAAATCACAGTTGTCCCATCAACATGGCCAGCTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406343|gb|EV276158.1|EV276158
EST:     AAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCAT                         GTAGTTGCTTATGATTTTGGAATCAAGC
genomic: AAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCATgtaagtaatg ... gaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGC
EST: gi|7234233|gb|AW569572.1|AW569572
EST:     AAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCAT                         GTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA
genomic: AAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCATgtaagtaatg ... gaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA
EST: gi|151397657|gb|EV267530.1|EV267530
EST:     AAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCAT                         GTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA
genomic: AAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCATgtaagtaatg ... gaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA
EST: gi|208181091|gb|GD980158.1|GD980158
EST:     AAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCAT                         GTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA
genomic: AAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCATgtaagtaatg ... gaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttgacctttgtgtaattaattaatgtcacatgctgatgaatgaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCATCTTATGGCTGCAAAATCACCGTTGTTCCATGTACATGGCCAGCATCAG
                                  tgctgat  putative branch site (score: 3)
          tttgtgtaattaatta  TA-rich tract