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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgtcatgtttcccccatttctgttgtgatttttgcaataattgattcacaaagttgttttcttaataaatatgtgtgtaactttctatctattcttcagTGCACACCTTGAGTGGAACCTTGATGGTCTTCTGGAGAAAATTTGGGAATATCTCGACTTAACTCGTATTTATACTAAACCTAAAGGGATGAATCCTGAT

Basic information

species Glycine max
transcript GLYMA06G15180.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15180.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0031g01620.t01 (Vitis vinifera), 3'ss of exon 7
ctgtcatgtttcccccatttctgttg--tgatttt--tgcaataattgattcacaaagttgttttcttaataaatatgtgtgtaactttctat--ctatt-cttcagTGCACACCTTGAGTGGAACCTTGATGGTCTTCTGGAGAAAATTTGGGAATATCTCGACTTAACTCGTATTTATACTAAACCTAAAGGGATGAATCCTGAT
      || |  |    ||| ||     | || ||  |  | | ||| |||   |   || |  | |       | ||  |||   ||  |||   |||| || |||||| ||||| |||||||||||||||||||| || || || || ||||| ||||| || |||||||| || || || || || || || |||||||| |||
------tggtgtcattgtttttgccaaataatcttattctagtcattcatttg-aggtttttcatttctccctttttggttgtggtttgatatgattattgctgcagTGCTCACCTGGAGTGGAACCTTGATGGTCTGCTAGAAAAGATATGGGAGTATCTTGATTTAACTCGCATATACACAAAGCCCAAGGGAATGAATCCCGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6913556|gb|AW395086.1|AW395086
EST:     CTTGAGGAACTGGAGATCTTGGATAAGCTACCTCATTACTGCCCAATCAG                         TGCACACCTTGAGTGGAACCTTGATGGTCTTCTGGAGAAAATTTGGGAATA
genomic: CTTGAGGAACTGGAGATCTTGGATAAGCTACCTCATTACTGCCCAATCAGgtaatacttc ... tattcttcagTGCACACCTTGAGTGGAACCTTGATGGTCTTCTGGAGAAAATTTGGGAATA
EST: gi|10846012|gb|BF069005.1|BF069005
EST:     CTTGAGGAACTGGAGATCTTGGATAAGCTACCTCATTACTGCCCAATCAG                         TGCACACCTTGAGTGGAACCTTGATGGTCTTCTGGAGAAAATTTGGGAATA
genomic: CTTGAGGAACTGGAGATCTTGGATAAGCTACCTCATTACTGCCCAATCAGgtaatacttc ... tattcttcagTGCACACCTTGAGTGGAACCTTGATGGTCTTCTGGAGAAAATTTGGGAATA
EST: gi|13481567|gb|BG510910.1|BG510910
EST:     CTTGAGGAACTGGAGATCTTGGATAAGCTACCTCATTACTGCCCAATCAG                         TGCACACCTTGAGTGGAACCTTGATGGTCTTCTGGAGAAAATTTGGGAATA
genomic: CTTGAGGAACTGGAGATCTTGGATAAGCTACCTCATTACTGCCCAATCAGgtaatacttc ... tattcttcagTGCACACCTTGAGTGGAACCTTGATGGTCTTCTGGAGAAAATTTGGGAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcacaaagttgttttcttaataaatatgtgtgtaactttctatctattcttcagTGCACACCTTGAGTGGAACCTTGATGGTCTTCTGGAGAAAATTTGGGAATATCTCGACTTAACTCGTATTTATACTAAACCTAAAGGGATGAATCCTGAT
                              gtgtaac  putative branch site (score: 3)
                                    ctttctatctattctt  CT-rich tract
     aaagttgttttcttaa  TA-rich tract