1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgttttaaccacggccaactttgggtgtctctagttttttgcattgtcacaatcatttacttgaagtacattctgtcaccctgtttctttttaatgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCAGTTGTGAGTTCTAATGTCGGACAAAGACAAATGTCTCCTGTATGGAGCA
species | Glycine max |
transcript | GLYMA06G14970.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCAEST: gi|21677608|gb|BQ629959.1|BQ629959
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCAEST: gi|6913826|gb|AW395356.1|AW395356
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCAEST: gi|23733226|gb|BU764800.1|BU764800
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCAEST: gi|254324664|gb|GR834089.1|GR834089
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCAEST: gi|23732948|gb|BU764655.1|BU764655
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCAEST: gi|16348409|gb|BI974004.1|BI974004
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCAEST: gi|21257143|gb|BQ454031.1|BQ454031
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCAEST: gi|13477571|gb|BG507400.1|BG507400
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCAEST: gi|254314908|gb|GR829901.1|GR829901
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
acaatcatttacttgaagtacattctgtcaccctgtttctttttaatgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCAGTTGTGAGTTCTAATGTCGGACAAAGACAAATGTCTCCTGTATGGAGCA
ttttaat putative branch site (score: 3)
tgtttcc CT-rich tract
tttctttttaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttttaaccacggccaactttgggtgtctctagttttttgcattgtcacaatcatttacttgaagtacattctgtcaccctgtttctttttaatgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCAGTTGTGAGTTCTAATGTCGGACAAAGACAAATGTCTCCTGTATGGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA