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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatccattacttgatcttaattacttgatatcttaatattgccacttgtcggcatttgaagctcataaagtgtcattttgattttttgctgattggtgtattctttttttcgtagAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTGAA

Basic information

species Glycine max
transcript GLYMA06G13330.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13330.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatatccattacttgatcttaattacttgatatcttaatattgccacttgtcggcatttgaagctcataaagtgtcattttgattttttgctgattggtgtattctttttttcgtagAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTGAA
                              | || || || ||||   |||||   ||||     ||  ||    | | ||| || | |||  |||   | |  | | || |  | || || | |  |  || ||||| || || || || |||| | | || |||||||||||| |||| ||||||||||||||| |  |||||   ||
----------------------------gtacatgttcatgttgctctttgtcaa-atttatcattcccaa----ttactttcatgtattga-gatcaatttcatttgttatctgaagGATTTGGGGGAAACAGATTACTATTGTCCCACATGCAGAACAAAATTTGATTTTGAGCTATCAGATTCAGAAAAACCAGACTCAAAATCCAA

upper sequence: GLYMA06G13330.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 7
-----------gtatatccattacttgatcttaattacttgatatcttaat-attgccacttgtcggcatttgaagctcataaagtgtcattttg-attttttgctgattggtgtattctttttttcgtagAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTGAA
             |  |||||  |   |  ||| |   ||| | | || |  |   |||||| ||    ||| |||  ||| |||    |  ||| |   ||  |||| ||   ||||   |||||  ||||||||||  |  |||||||||||||||||| |||||||||| |||||| ||||||| || || |||||||||| |   ||||| ||||| ||
gttggctcatcacagttccatctccaaacattattcttttgttttttttaccacaaccacttatcat--ttttaagtgcatgaaggaaaaaattgtagacttctctgactgagttatttccttttt--tagAATCTTGGGGCTACTGATTATTACTGCCCTGCTTGCAAAGCAAAGTTTAATTTTGAATTGTCAGATTCAGAAAGATGGCAGCCTAAAGTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcataaagtgtcattttgattttttgctgattggtgtattctttttttcgtagAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTGAA
                          tgctgat  putative branch site (score: 3)
                                    tgtattctttttttc  putative PPT
            tcattttgatttttt  TA-rich tract