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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttaatgtacttgtttggttcattcctcatatcttcaattatgaattttttaaaaatctaacctgacaaaaactactgtgtttgctttcttaaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGAGTTTTATGATGACAACAGGTTAGTTTTGCATTCTCTGTAGGGCACTGAT

Basic information

species Glycine max
transcript GLYMA06G13240.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13240.2 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G171410_T05 (Zea mays), 3'ss of exon 6
----------------cttaatgtacttgtttggttcattcctcatatcttcaattatgaattttttaaaaatc-------taacctgacaaaaact---actgtgtttgctt-tcttaaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGAGTTTTATGATGACAACAGGTTAGTTTTGCATTCTCTGTAGGGCACTGAT
                |||     | ||  | |  |    |   ||   |  ||    |||  | |  ||| ||       ||   |||  | |  |   ||  || | | || | || ||||  || ||  | ||||||||||| ||||| || |||||||| || ||||| ||||||||||||||||| |||||                               
gttcttctctcatttactttcaacattttgtcgtatatcccgctatcattataacctagaacctctgtaaattcaagcaagtagggtgatgagagttttcacaatgctaggttgtgttgaaac--agATTATCAAGGGAAGCTGGACTTGAATATGTGGAGATCCAGAATTTAACCGAGTTTTATGATGATAACAG-------------------------------

upper sequence: GLYMA06G13240.2 (Glycine max), 3'ss of exon 7
lower sequence: AT3G52210.2 (Arabidopsis thaliana), 3'ss of exon 7
-cttaatgtacttgtttggttcattcctcatatcttcaa--ttatgaattttttaaaaatctaacctgacaaaaactactgtgtttgctttcttaaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGAGTTTTATGATGACAACAGGTTAGTTTTGCATTCTCTGTAGGGCACTGAT
 | | || |   |  | | |    | |  ||  | || |  || |  || | ||   | |||       | ||   || ||| || |  ||  |   | ||||||| || ||||||||||| ||||| |  ||||| ||||||| ||| || || ||||||||||| |||||                               
tcgtgatattgcttctagttgagctacaaatgacatctagtttgtatatatctttcgagtcttggtcatctaac-ttattgttttggtgtt--tgctattcagGTTAGCGAGGGAAGCTGGCCTTGAATTTGTGGAAATTCAAAGTTTAACAGATTTTTATGATGATAACAG-------------------------------

upper sequence: GLYMA06G13240.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv13s0074g00190.t01 (Vitis vinifera), 3'ss of exon 7
--cttaatgtacttgtttggttcattcctcatatcttcaattatgaattttttaaaaatctaacctgacaaaaa-ctactgt----gtttgctttcttaaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGAGTTTTATGATGACAACAGGTTAGTTTTGCATTCTCTGTAGGGCACTGAT
    |||   |||| |||  | |||| | | ||| |||  | |  | |||  | ||    | || ||  ||  | || |||     || | | || || || ||||||||||||||||| || ||||||||||| ||||| ||||| ||  |||| || ||||||||||| |||||                               
agactaac--acttctttcctccatttcacttattttc--tcagcagttt--tgaattcttgacatgcaaaggatcttctgacacagtctaccttatttaa-ctcagGTTGGCCAGGGAGGCAGGTCTTGAGTATGTGGAAATTCAGAACCTGACTGACTTTTATGATGATAACAG-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396980|gb|EV266853.1|EV266853
EST:     GATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAG                         -TTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAAT
genomic: GATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAGgttttcatct ... taaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttaaaaatctaacctgacaaaaactactgtgtttgctttcttaaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGAGTTTTATGATGACAACAGGTTAGTTTTGCATTCTCTGTAGGGCACTGAT
                                   tttgctttctt  CT-rich tract
     taaaaatctaa  TA-rich tract