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...cttaatgtacttgtttggttcattcctcatatcttcaattatgaattttttaaaaatctaacctgacaaaaactactgtgtttgctttcttaaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGAGTTTTATGATGACAACAG
species | Glycine max |
transcript | GLYMA06G13240.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAG GTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGAEST: gi|151398387|gb|EV268258.1|EV268258
genomic: GAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAGgttttcatct ... taaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGA
EST: GATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAG GTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGAEST: gi|151396980|gb|EV266853.1|EV266853
genomic: GATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAGgttttcatct ... taaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGA
EST: GATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAG -TTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATEST: gi|10234343|gb|BE803231.1|BE803231
genomic: GATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAGgttttcatct ... taaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAAT
EST: GATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAG GTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGA
genomic: GATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAGgttttcatct ... taaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGA
ttttttaaaaatctaacctgacaaaaactactgtgtttgctttcttaaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGAGTTTTATGATGACAACAG
tttgctttctt CT-rich tract
taaaaatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaatgtacttgtttggttcattcctcatatcttcaattatgaattttttaaaaatctaacctgacaaaaactactgtgtttgctttcttaaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGAGTTTTATGATGACAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT