1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttgcttgtcttgatattaactttttagctcagtgcaaaaatgtcatgacaagttgtcattattcatttgtttcttaatattctggacaaaatatgtcagGGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC
species | Glycine max |
transcript | GLYMA06G12570.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGATGTATTGATGGAAATGCTTAGCGCCTTGAATCCTAAAGACCGTGAG GGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTACEST: gi|207719265|gb|GD699998.1|GD699998
genomic: CTGATGTATTGATGGAAATGCTTAGCGCCTTGAATCCTAAAGACCGTGAGgtatattatt ... aatatgtcagGGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTAC
EST: CTGATGTATTGATGGAAATGCTTAGCGCCTTGAATCCTAAAGACCGTGAG GGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTACEST: gi|207752136|gb|GD724521.1|GD724521
genomic: CTGATGTATTGATGGAAATGCTTAGCGCCTTGAATCCTAAAGACCGTGAGgtatattatt ... aatatgtcagGGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTAC
EST: TCCTAAAGACCGTGAG GGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTACEST: gi|207710083|gb|GD691173.1|GD691173
genomic: TCCTAAAGACCGTGAGgtatattatt ... aatatgtcagGGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTAC
EST: CTGATGTATTGATGGAAATGCTTAGCGCCTTGAATCCTAAAGACCGTGAG GGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTACEST: gi|207752902|gb|GD725482.1|GD725482
genomic: CTGATGTATTGATGGAAATGCTTAGCGCCTTGAATCCTAAAGACCGTGAGgtatattatt ... aatatgtcagGGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTAC
EST: TCCTAAAGACCGTGAG GGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTACEST: gi|192296865|gb|FG991906.1|FG991906
genomic: TCCTAAAGACCGTGAGgtatattatt ... aatatgtcagGGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTAC
EST: CTGATGTATTGATGGAAGTGCTTAGCGCCTTGAATCCTAAAGACCGTGAG GGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTACEST: gi|19934603|gb|BQ079633.1|BQ079633
genomic: CTGATGTATTGATGGAAATGCTTAGCGCCTTGAATCCTAAAGACCGTGAGgtatattatt ... aatatgtcagGGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTAC
EST: CTGATGTATTGATGGAAATGCTTAGCGCCTTGAATCCTAAAGACCGTGAG GGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTACEST: gi|19453094|gb|BM954504.1|BM954504
genomic: CTGATGTATTGATGGAAATGCTTAGCGCCTTGAATCCTAAAGACCGTGAGgtatattatt ... aatatgtcagGGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTAC
EST: CTGATGTATTGATGGAAATGCTTAGCGCCTTGAATCCTAAAGACCGTGAG GGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTAC
genomic: CTGATGTATTGATGGAAATGCTTAGCGCCTTGAATCCTAAAGACCGTGAGgtatattatt ... aatatgtcagGGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTAC
atgacaagttgtcattattcatttgtttcttaatattctggacaaaatatgtcagGGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC
tcttaat putative branch site (score: 3)
attattcatttgtttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgcttgtcttgatattaactttttagctcagtgcaaaaatgtcatgacaagttgtcattattcatttgtttcttaatattctggacaaaatatgtcagGGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC
- tgcttgt
- - - - - - - - - - - - - - -tcagtgc
- - - - - - - - - - - - - - - - - - - - - -tcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attctgg